Klebsiella pneumoniae subsp. pneumoniae MGH 78578 (serotype K52): KPN_01083
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Entry
KPN_01083 CDS
T00566
Symbol
rne
Name
(GenBank) RNase E, membrane attachment, mRNA turnover, maturation 5S RNA
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
kpn
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 (serotype K52)
Pathway
kpn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kpn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KPN_01083 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kpn03019
]
KPN_01083 (rne)
03009 Ribosome biogenesis [BR:
kpn03009
]
KPN_01083 (rne)
Enzymes [BR:
kpn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KPN_01083 (rne)
Messenger RNA biogenesis [BR:
kpn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KPN_01083 (rne)
Ribosome biogenesis [BR:
kpn03009
]
Prokaryotic type
rRNA processing factors
KPN_01083 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
ABR76516
UniProt:
A6T7E5
LinkDB
All DBs
Position
complement(1231954..1235178)
Genome browser
AA seq
1074 aa
AA seq
DB search
MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE
RHGFLPLKEIAREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLA
GSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEALQWD
LSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQH
IAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAID
INSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRL
REAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSI
LRLIEEEALKENTKEVHAIVPVPIASYLLNEKRAAVSAIESRQGDVRVIIVPNDEMQTPH
YSVLRVRKGEETSTLSYLLPKLHEEEMALPGDDEPAERKRPEQPALAAFVMPDAPPAPML
EEPAAAPVAAAAPVAAAAPAQPGLLSRFFSALKNIFSGAEEAKPAEVEIEKKAEEKPERQ
QERRKPRANNRRDRNDRRDNRDNRDNRDNRDNRDTRADNAEGREPRESREENRRNRREKP
SQNVEARDVRQTSGDDAEKAKSRDEQQPRRERTRRRNDDKRQAQQEAKAQTREEPVVQET
EQEERVQTLPRRKPRQLAQKVRVESAVVEPVAEIVPEAVVAEVIAPHSEPVKAELPAGVE
SVADQDENGESREANGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPEM
ASGKVWIRYPVVRPQDQQPEEVQVQDASVAKTVEAVAAPVAVVETVTAAPVTVEPATMEP
VTAEPVVVEPVAAAEPLVVDAAEVVAPAAVEPAPQEPVTEAPAVEAPQAIAPVTLDAEPV
VVEPEAVETTPVVAAPVETIAPVAETVEQAPVTEAAPAEPVKAEPPVSKPVVVAGHRHAT
APMTRAPAPDYVPEAPRHSTWVRPPFAFEGKGAAGGHSATHKATAEPTRPQPVE
NT seq
3225 nt
NT seq
+upstream
nt +downstream
nt
atgttaatcaacgcaactcagcaggaagagttgcgcgtcgcccttgttgatgggcagcgc
ctgtacgacctggatatcgaaagccccgggcacgaacagaaaaaagcgaacatctacaaa
ggcaaaatcacccgcattgaacccagccttgaagccgcgtttgttgattacggcgccgag
cgtcatggtttcctccccctcaaagaaatcgcccgcgaatacttccccgccaactacaat
gcgcatggtcgtcctaatatcaaagacgtactgcgggaaggtcaggaagttatcgtgcag
attgataaagaagaacgcggcaacaaaggcgctgcgctcaccacctttatcagcctggcg
ggcagctatctggtactgatgccgaacaacccgcgcgccgggggaatttcccgccgtatc
gagggcgacgaccgtaccgaactgaaagaagcgctggcgagcctggagcttccggacggc
atgggcctgatcgttcgcaccgctggcgtcggcaaatccgccgaagccctgcagtgggac
ctgagcttccgcctgaagcactgggaagcgattcagaaagccgcggaaagccgtccggcg
ccgttcctgatccaccaggaaagcaacgtcattgtccgcgccttccgtgactacctgcgc
caggacatcggcgaaatcctgatcgataacccgaaagtgcttgagctggcgcgccagcat
atcgccgcgctgggtcgtccggatttcagcagcaaaatcaaactgtacaccggtgaaatc
ccgctgttcagccattatcagatcgaatcgcaaattgagtccgccttccagcgcgaagtg
cgcctgccttccggcgggtctatcgttatcgatagcaccgaagcgctgaccgcgatcgat
atcaactccgcccgcgccacccgcggcggcgatatcgaagagacagccttcaataccaac
ctcgaagcggctgacgaaattgcccgccagctgcgtctgcgcgacctcggcggcctgatc
gttatcgacttcatcgatatgaccccggttcgccaccagcgcgccgtggagaatcgtctg
cgcgaagccgtccgtcaggaccgggcgcgcattcagatcagccatatttcgcgcttcggc
ctgctggagatgtcccgtcagcgcctgagcccgtcgctgggcgagtccagccaccacgtc
tgcccgcgctgctccggcaccggcaccgtgcgtgataacgaatcgctgtcgctctctatt
ctgcgtctgatcgaagaagaagcgctgaaagagaataccaaagaagtccacgccattgtt
ccggtaccgatcgcctcctatctgctgaacgaaaaacgtgccgcagtgagcgctatcgaa
tcccgtcagggcgatgtgcgcgttattatcgtgccaaacgacgaaatgcaaacgccgcac
tactccgtcctgcgcgtgcgcaaaggtgaagaaacctcaacgctgagctatctgctgccg
aagctgcatgaagaagagatggcgctgccaggcgacgatgagccggcggagcggaaacgt
ccggaacagccggccctggccgcttttgtcatgccagatgcgccgccagccccgatgctc
gaagagcctgccgccgcgcctgtcgccgcagcggcaccggtcgcggccgccgcaccggcg
cagcctggcctgctctcacgcttcttcagcgcgctgaagaatatcttctctggcgccgaa
gaggccaaaccggctgaagttgagatcgagaagaaagcggaagaaaaaccggagcgtcag
caggagcgtcgtaaaccgcgcgccaacaaccgccgcgaccgcaacgaccgccgtgataac
cgcgacaatcgtgacaaccgcgataaccgtgacaatcgcgacacccgtgcggacaatgcc
gagggccgtgaaccgcgcgaatcgcgtgaagagaaccgtcgcaaccgtcgcgagaagccg
tcgcagaacgtggaagcccgtgatgttcgccaaacctcaggcgacgacgcggagaaagcg
aaatcccgtgacgagcagcagccgcgccgcgaacgcacccgccgccgcaatgacgacaaa
cgtcaggcgcagcaggaagccaaagcgcagactcgcgaagagccggttgtgcaggagacg
gagcaggaagagcgtgtacaaactctgccgcgtcgtaaaccgcgccagctggcacagaaa
gtgcgcgttgagtccgctgtcgtcgagccagttgccgagatcgtgccagaagccgtagtg
gctgaagttatcgctccgcacagcgagccggtgaaagccgagctgccggcaggggtggag
agcgtggcggaccaggacgaaaatggcgaatcccgtgaagcgaacggtatgccgcgtcgc
tcacgtcgctccccgcgtcacctgcgcgtcagcggtcagcgtcgtcgtcgctatcgtgac
gaacgctatccgacccagtcgcctatgccgctgaccgtagcctgcgcatcgccggagatg
gcttccggtaaagtctggatccgctacccggtggttcgtccgcaggatcagcagccggaa
gaggttcaggttcaggacgccagcgtcgcgaaaactgtcgaggccgtagcggccccggtt
gccgtcgttgaaaccgttaccgctgcgccggtcaccgtcgagccggctaccatggaacca
gtaaccgctgagccggtagtcgtcgagccggtagcggccgccgagccgctggtcgttgat
gctgcggaagttgtcgcgccagcagccgtcgagccagcgcctcaggagccggtcaccgaa
gcaccggctgtcgaagcgcctcaggctatcgcgccagtgacgctcgacgccgagccggtg
gtggtagaacctgaagcggtggaaacgacgcctgtcgttgcagcgccagtggaaactatc
gccccggtcgcagaaaccgtggagcaagcgccagtgaccgaagcggcccctgccgaaccg
gtcaaagccgagcccccggtgagcaagccggtcgtagtggcgggtcatcgccatgccacc
gcgccaatgacccgtgcgccagctccggactatgtcccggaagcaccgcgtcacagcacc
tgggtgcgcccgccgttcgcctttgaaggtaaaggcgccgccggtggtcatagcgcgacc
cataaagccaccgctgaaccgactcgcccacagcccgtcgagtaa
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