Klebsiella pneumoniae 32192: KU54_016190
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Entry
KU54_016190 CDS
T03746
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kpne
Klebsiella pneumoniae 32192
Pathway
kpne03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kpne00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KU54_016190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kpne03400
]
KU54_016190
Enzymes [BR:
kpne01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KU54_016190
DNA repair and recombination proteins [BR:
kpne03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KU54_016190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AJB58246
UniProt:
A0A081M616
LinkDB
All DBs
Position
3193774..3197220
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEQYRYSLPVKAGDQRQLGELTGAACATLVAEMAERHNGPVVLVAPDMQNALRLNDEIR
QFTDSMVMGLADWETLPYDSFSPHQDIISSRLATLYQLPTMQRGVLIVPVSTLMQRVCPH
SFLHGHALVMKKGQRLSRDALRDQLEGAGYRHVDQVMEHGEYTTRGALLDLFPMGSDQPY
RLDFFDDEIDSLRLFDVDSQRTLEEVAAINLLPAHEFPTDQTAIELFRSQWRDRFEVKRD
AEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPASTLIVNTGDLEASAERFQNEAR
ARFENRGVDPMRPLLPPELLWLRSDELFSELKKWPRVQLKTERLADKAANTNLGYQTLPD
LAVQAQNKAPLDNLRRFLESFTGPVIFSVESEGRREALSEMLARIKVAPKHVLRLEEATG
NGRYLMIGAAEHGFIDSQRGLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIG
QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA
PLHKLGGDAWTRARQKAAEKVRDVAAELLDIYAQRAAKAGFAFKHDREQYQLFCDGFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL
LAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQAQILEQAAEGKIDILIGTHKLLQSEVKL
RDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDALVVREAILRETLRGGQVYYLFNDVENIQKAADKLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGQMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
NTRLSFYKRIASAKNEQDLEEIKVELIDRFGRLPDAVRNLLDIARLRQQAQKLGIRKLES
NEKGGVIEFNEKNNVNPVWLIGLLQKQPQHFRLDGPTRLKFMQDLEERKTRMDWVRQFMR
QLEENAVA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacaatatcgatactcattgccggtcaaagccggcgatcagcgccagcttggc
gagttgaccggcgcagcctgcgccactttggtggcggagatggccgaacgccacaacggc
ccggtggtgctggtggcgcctgacatgcaaaacgcgctgcgtctgaacgacgagatcagg
cagtttaccgacagcatggtgatggggctggcggactgggaaacgctcccttacgacagc
ttctcgccgcatcaggacatcatctcctcccgtcttgccaccctttaccagttacccacc
atgcagcgcggcgtactgatcgtcccggtcagcaccctgatgcagcgcgtctgtccgcac
agcttccttcacggccacgcgctggtgatgaaaaagggccagcgcctgtcgcgcgatgcg
ctgcgcgatcagctggagggggccggctaccgccatgtcgatcaggtgatggagcacggc
gaatatactacccgcggcgcgttgctcgacctgttcccgatgggtagcgatcagccctac
cgccttgatttctttgacgatgaaatcgacagcctgcgcctgttcgacgttgacagccag
cgcacgctggaggaagtggcggccattaacctgctgccggcgcacgagttccccaccgac
cagaccgctattgagctgttccgcagccagtggcgcgaccgctttgaggtgaagcgcgat
gccgagcacatctatcagcaggtcagtaaagggacgctacctgccggtatcgaatactgg
caaccgctgttcttcagcgagccgctgccgccgttattcagctatttcccggccagcacg
ctgatcgtcaacaccggcgatctcgaggccagcgcggaacgattccagaatgaagcccgc
gcccgctttgaaaaccgcggcgtcgacccgatgcgcccgctcctgccgcctgagctgctg
tggctgcgcagcgatgagctattcagcgaactgaaaaaatggccgcgcgtgcagctgaaa
accgaacgtctggcggacaaagcggcgaatactaatctgggctaccagacgctgccggac
ctcgccgtccaggcgcagaacaaagcgccgctggataatctgcgccgcttcctcgagtcc
tttaccggtccggtgatcttctcggtggaaagcgaaggccgccgtgaagcgctgagcgaa
atgctggcgcggattaaagttgcgccaaaacatgtgctgcgtctggaggaagccaccggc
aacggccgctatctgatgattggcgccgccgagcacgggtttatcgacagccagcgcggc
ctggcgctgatttgcgagagcgacctgctcggcgagcgggtggcgcgccgtcgtcaggat
tcgcgacgcaccattaaccctgacactctgattcgcaacctcgccgaactgcatatcggc
cagccggtcgttcacctggaacacggcgtgggccgctacgcgggcatgactaccctggaa
gccggcggcatcaccggcgaatatctgatgctgacctacgccaacgatgccaagctatac
gttccggtatcgtccctgcatcttatcagccgctacgccggcggggcggaagaaaacgcc
cccctgcacaagctgggcggcgatgcctggacccgggcgcgacaaaaagcggctgagaaa
gtacgcgacgtggcggccgagctgctggatatctatgcccagcgcgcggcgaaggcgggt
tttgcctttaaacacgaccgcgaacagtatcagctgttctgcgacggcttcccatttgaa
accacgccggatcaggcgcaggcgatcaacgccgtcctcagcgatatgtgccagccgctg
gccatggaccgcctggtatgcggcgatgtgggcttcggcaagaccgaagtggccatgcgc
gccgccttcctcgccgtggagaaccacaagcaggtggcggtgctggtgccgaccaccctg
ctggctcagcagcactatgacaatttccgcgatcgtttcgccaactggccggtacgcatc
gaaatgctctcccgcttccgcagcgctaaagagcaggcgcagatcctcgagcaggccgcg
gaaggcaaaatcgatatcttgatcggcacccacaagctgctgcagagcgaggtgaagctg
cgcgatctcgggctgctgatcgtcgacgaagagcaccggtttggcgtgcggcataaagag
cgcatcaaagcgatgcgcgccgatgtcgatattctgaccctcaccgccacgccgatcccg
cggacgctgaacatggcgatgagcgggatgcgcgatctgtcgatcatcgccacgccgccg
gcgcgccgcctggcggtgaagaccttcgttcgcgaatatgacgccctggtggtgcgcgag
gcgatcctgcgcgaaacgctgcgcggcggccaggtctactatctgtttaatgacgttgag
aacatccagaaagccgccgacaagctggcggagctggtgccggaggcgcggatcgccatc
ggtcacggtcagatgagggagcgcgaactggagcgggtgatgaatgacttccatcaccaa
cgcttcaatgtgctggtgtgcaccaccatcatcgaaaccgggatcgacattcccaccgcc
aacaccatcatcatcgaacgcgccgaccattttggcctcgcccagctgcaccaactgcgc
ggccgcgttggccgttcgcatcaccaggcctatgcctggctgctgacgccgcatccgaaa
gcgatgaccaccgatgcgcaaaagcgcctcgaggccattgcgtcgctggaggatctcggc
gccggctttgcgctggcaacccacgatctggagattcgcggggccggggaactgcttggg
gaagatcagagcggtcagatggaaaccatcggtttctccctgtatatggagctgctggag
aacgcagtcgatgcgctgaaagccgggcgtgaaccctcgctggaagatctcaccagtcag
cagacggaggttgaactgcgcatgccttccctgctgcctgatgatttcatccctgacgtc
aatacgcgcctgtcattctataagcgcattgccagcgccaaaaacgaacaggatctggag
gagatcaaagtcgagctgatcgatcgttttggccgcctgcccgatgccgtccgcaacctg
ctggatatcgcccgtctgcgtcagcaggcgcaaaagttagggatccgcaagctggaaagc
aacgaaaaaggcggcgtgatcgaatttaacgagaaaaacaacgtcaatccggtgtggctg
atcggcctgctgcagaagcagccccagcacttccgcctggacggtcccacgcgcctgaag
ttcatgcaggacctggaggagcgtaaaacgcggatggactgggttcgccagtttatgcgc
cagctggaagagaacgccgtcgcctga
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