Klebsiella pneumoniae subsp. pneumoniae 1084 (serotype K1): A79E_0644
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Entry
A79E_0644 CDS
T02213
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
kpp
Klebsiella pneumoniae subsp. pneumoniae 1084 (serotype K1)
Pathway
kpp02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
kpp00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
A79E_0644
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kpp03021
]
A79E_0644
Transcription machinery [BR:
kpp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
A79E_0644
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_SUN2
ZrgA
Motif
Other DBs
NCBI-ProteinID:
AFQ64029
LinkDB
All DBs
Position
complement(664595..666493)
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AA seq
632 aa
AA seq
DB search
MSTARLPTPIKRIKCGYRLMEQNPQSQLKLLVQRGKEQGYLTYAEVNDHLPEDIVDSDQI
EDIIQMINDMGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMY
MREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDL
ITGFVDPNAEEDMAPTATHVGSELSQEEMDDDEDEDEDEDADDNSDDDNSIDPELAREKF
AELRTQYELTRDTIKAKGRSHAAAQEEILKLSEVFKQFRLVPKQFDYLVNSMRSMMDRVR
TQERIIMKLCVEQCKMPKKNFITLFTGNETSETWFNAAVAMNKPWSEKLLEVKEDVQRGL
QKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQF
LDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETIN
KLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGD
FIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFD
VTRERIRQIEAKALRKLRHPSRSEVLRSFLDD
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacagcccgtctgccgacaccaatcaaacgaattaagtgtggataccgtcttatg
gagcaaaacccgcagtcacagctgaagcttcttgtccaacgtggtaaggagcaaggctat
ctgacctatgccgaggtcaatgaccatctgccggaagatatcgtcgattccgatcagatc
gaagacatcatccaaatgatcaacgacatgggtattcaggtgatggaagaagcaccggat
gccgatgatctgatgcttgccgaaaacaccgcggatgaagatgctgccgaagccgccgcg
caggtgctctccagcgtggaatccgaaatcgggcgcacgaccgacccggtgcgtatgtac
atgcgtgaaatgggtaccgtagagctactgacccgtgaaggcgaaattgacatcgccaaa
cgcatcgaagacggcatcaatcaggtgcagtgctccgttgccgaatatccggaagcgatc
acctacctgcttgagcagtacgaccgcgttgaagcggaagaagcccgtctgtccgatctg
atcaccggtttcgtcgatccgaacgccgaagaagatatggcgccaaccgccacccacgtt
ggctccgagctgtctcaggaagagatggatgacgacgaagacgaagacgaagatgaagac
gccgacgacaacagcgatgacgacaacagcatcgacccagagctggcccgtgagaaattc
gccgagctgcgtacccagtacgagctgacgcgcgacaccatcaaagccaaaggtcgtagc
catgccgccgcccaggaagagatcctgaagctgtctgaagtcttcaagcagttccgcctg
gtgccgaagcagttcgattacctggtcaacagcatgcgcagcatgatggatcgcgttcgt
actcaggaacgtatcatcatgaagctgtgcgttgagcagtgcaaaatgccgaagaaaaac
ttcatcaccctgttcaccggcaacgaaaccagcgagacctggttcaacgccgcggtggca
atgaacaagccgtggtctgagaagctgctggaagtgaaagaagatgtgcagcgcggcctg
cagaagctgcagcagattgaagaagagaccggcctgaccatcgagcaggttaaagatatc
aaccgtcgcatgtccatcggcgaagcgaaagcccgtcgtgcgaagaaagagatggttgaa
gcgaacctgcgtctggttatctctatcgccaagaaatacaccaaccgcggtctgcagttc
ctcgacctgattcaggaaggcaacatcggtctgatgaaagcggtcgataagttcgaatac
cgtcgcggctacaagttctcgacctacgccacctggtggatccgtcaggccatcacccgc
tctatcgcggatcaggcgcgcaccatccgtattccggtgcatatgattgagactatcaac
aagctcaaccgtatctcccgtcagatgctgcaggagatgggccgtgaaccgaccccggaa
gagctggctgagcgtatgctgatgccggaagacaaaatccgtaaagtgctgaagatcgcc
aaagagcctatctccatggaaacgccgatcggcgacgatgaagattcgcatctgggggat
ttcatcgaggataccaccctcgagctgccgctggattctgcaaccaccgagagcctgcgc
gcggcaacgcatgacgtgctggccggcctcaccgctcgtgaagcgaaagtgctgcgtatg
cgtttcggtatcgacatgaacaccgaccacacgctggaagaagtgggtaaacagttcgac
gttacccgcgaacgtatccgtcagatcgaagcgaaggcgctgcgtaaactgcgccacccg
agccgttctgaagtgctgcgtagcttcctcgacgattaa
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