Klebsiella pneumoniae subsp. pneumoniae 1084 (serotype K1): A79E_4614
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Entry
A79E_4614 CDS
T02213
Name
(GenBank) 3'-to-5' exoribonuclease RNase R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
kpp
Klebsiella pneumoniae subsp. pneumoniae 1084 (serotype K1)
Pathway
kpp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kpp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A79E_4614
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kpp03019
]
A79E_4614
03016 Transfer RNA biogenesis [BR:
kpp03016
]
A79E_4614
Enzymes [BR:
kpp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
A79E_4614
Messenger RNA biogenesis [BR:
kpp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A79E_4614
Transfer RNA biogenesis [BR:
kpp03016
]
Prokaryotic type
tRNA degradation factors
A79E_4614
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
TFIIE_beta
Rho_RNA_bind
MetOD2
Motif
Other DBs
NCBI-ProteinID:
AFQ67823
LinkDB
All DBs
Position
complement(4897384..4899816)
Genome browser
AA seq
810 aa
AA seq
DB search
MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAIELNIEGEEQTEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH
GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EEIMGARMGYVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDMALRTHEIPYVWPPA
VEKQVSGLKEQVPEEAKAGRVDLRSLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPGTPLDAEARSRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
SKGRLTGYKFYEAVMSSHARLTYTKVWHMLQGDQELREHYAPLVKHIEELHNLYKVLESA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAQEP
ALFRIHDKPTTEAITSFRTVLAELGLELPGGNKPEPRDYAELLTSIADRPDAEMLQTMLL
RSMKQAVYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAKEQGHKGNSTETG
GWHYSMEEMLQLGQHCSMTERRADEATREVSDWLKCDFMQDQVGNIFSGVIASVTGFGFF
VRLNDLFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVRVEAVNMDERKI
DFTLISSERAPRNVGKTAREKAKKSTSGKPGGRRRQVGKQVNFEPDSAFRKEKETARPKK
EKKAKKPSAKTQKIAAATKAKRAAKKKIAE
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatccattccaggaacgcgaagctgagaagtacgcgaaccctatcccgagc
cgggaatttatcctcgaacatttaactaaacgggaaaagcctgccagccgcgatgagctg
gccatcgagttaaatatcgagggcgaagagcaaaccgaagcgctgcgccgccgcctgcgc
gcgatggagcgcgacggtcagctggtcttcacccgccgccagtgctatgccctgccggaa
cgcctcgatctcctcaaaggaaccgttattggccaccgcgatggctatggtttcctgcgt
gttgaagggcgcaaagacgatctgtacctgtcgtcagaacagatgaaaacctgtattcac
ggcgaccaggtgctggctcagccgctgggcgcggaccgtaagggccgccgcgaagcgcgc
atcgtccgcgtcctcgtgccgaaaaccagccagatagttggccgttacttcaccgacgct
ggcgtcggctttgtcgtcccggacgacagccgcctgagcttcgatatcctgatcccgccg
gaagagataatgggcgcgcggatgggctacgtggtcgtggtcgagctgacccagcgacca
acccgccgcaccaaagcggtgggtaaaatcgtcgaagtgctgggcgacaacatgggcacc
ggcatggccgtcgatatggcgctgcgtacccatgaaattccttatgtctggccgccggcg
gtggaaaaacaggtttccggtctcaaagaacaggtgccggaagaggcgaaggccggacgc
gtcgatttacgctcgctgccgttggttaccattgacggcgaagatgcccgcgacttcgat
gacgcggtgtactgcgagaagaaacgcggcggcggctggcgcctgtgggtagccattgcc
gacgtcagctactacgtgcgcccggggacgccgctggatgcggaagcgcgcagtcgtggc
acctcggtctacttcccgtcgcaggtagtgccgatgctgccggaagtgctgtctaacggt
ctatgctcgctgaacccgcaggtcgatcgcctgtgtatggtgtgcgagatgacgatttcg
tcaaaaggccgtctgaccggttataaattctatgaagcggtgatgagttcacatgctcgc
ctgacctataccaaagtgtggcatatgctgcagggtgaccaggaactgcgcgaacactac
gcgccgctggtgaagcacattgaagagctgcataacctctacaaagtgctggagagcgcc
cgcgaagagcgcggcggtatctcatttgaaagtgaagaagctaaattcatcttcaatgcc
gaacgccgtattgagcgtatcgaacagactcagcgtaacgatgcgcataagctgattgaa
gagtgcatgatcctggcgaacatctccgccgcgcgcttcgttgagaaggcgcaggagccg
gcgctgttccgtatccatgataagccaaccaccgaagcgattacctccttccgtaccgtg
ctggctgagctgggactggagctgcctggcggcaacaagccggagccgcgtgattacgcc
gagctgctaacctccatcgccgatcgcccggatgcggaaatgctgcagacgatgctcctg
cgctccatgaagcaggcggtctacgatccggaaaaccgcggtcactttggcctggcgctg
cagtcatacgcccacttcacctcgccgattcgtcgttacccggacctgtcgctgcaccgc
gctatcaagtatctgctggccaaagagcagggacataaaggcaacagcaccgagaccggc
ggctggcactacagcatggaagagatgctccagctgggtcagcactgttcgatgaccgag
cgccgcgccgacgaagcgacgcgcgaagtgtctgactggctgaagtgcgacttcatgcag
gatcaggtgggcaacatcttctccggcgtgatcgccagcgtgaccggctttggcttcttc
gtccgcctgaacgatctgtttatcgacggtctggtgcatgtttccagcctggataacgac
tattatcgtttcgaccaggtggggcagcgtctcattggtgagtccggcggccagacctat
cgcctgggcgaccgcgtggaagtccgtgtggaagcggtcaacatggacgagcggaaaatc
gactttaccctgatctccagcgagcgtgcgccgcgtaatgtcggcaagaccgcccgtgag
aaagcgaaaaagagtacctctggcaagccgggcggccgtcgccgccaggtgggtaagcag
gtaaacttcgagccggacagcgctttccgtaaagagaaagagaccgcccgaccgaagaaa
gagaaaaaagcgaaaaaaccgtcggcgaaaacacagaaaatcgccgccgcgacgaaagcc
aagcgcgcggcaaagaagaagatcgccgagtga
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