Klebsiella pneumoniae subsp. rhinoscleromatis SB3432: KPR_2153
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Entry
KPR_2153 CDS
T02793
Symbol
mfd
Name
(GenBank) highly similar to transcription-repair coupling factor from Escherichia coli O55:H7 strain CB9615 - EPEC (tr|D3QQA9)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kpr
Klebsiella pneumoniae subsp. rhinoscleromatis SB3432
Pathway
kpr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kpr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KPR_2153 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kpr03400
]
KPR_2153 (mfd)
Enzymes [BR:
kpr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KPR_2153 (mfd)
DNA repair and recombination proteins [BR:
kpr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KPR_2153 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CCI76383
LinkDB
All DBs
Position
complement(2250980..2254438)
Genome browser
AA seq
1152 aa
AA seq
DB search
MKPSMPEQYRYSLPVKAGDQRQLGELTGAACATLVAEMAERHSGPVVLVAPDMQNALRLN
DEIRQFTDSMVMGLADWETLPYDSFSPHQDIISSRLATLYQLPTMQRGVLIVPVSTLMQR
VCPHSFLHGHALVMKKGQRLSRDALRDQLEGAGYRHVDQVMEHGEYATRGALLDLFPMGS
DQPYRLDFFDDEIDSLRLFDVDSQRTLEEVAAINLLPAHEFPTDQTAIELFRSQWRDRFE
VKRDAEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPASTLIVNTGDLEASAERFQ
NEARARFENRGVDPMRPLLPPELLWLRSDELFSELKKWPRVQLKTERLADKAANTNLGYQ
TLPDLAVQAQNKAPLDNLRRFLESFTGPVIFSVESEGRREALSEMLARIKVAPKHVLRLE
EATGNGRYLMIGAAEHGFIDSQRGLALICESDLLGERVARRRQDSRRTINPDTLIRNLAE
LHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGA
EENAPLHKLGGDAWTRARQKAAEKVRDVAAELLDIYAQRAAKAGFAFKHDREQYQLFCDG
FPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLV
PTTLLAQQHYDNFRDRFANWPVRIEMFSRFRSAKEQAQILEQAAEGKIDILIGTHKLLQS
EVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSII
ATPPARRLAVKTFVREYDALVVREAILRETLRGGQVYYLFNDVENIQKAADKLAELVPEA
RIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQL
HQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAG
ELLGEDQSGQMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDF
IPDVNTRLSFYKRIASAKNEQGLEEIKVELIDRFGRLPDAARNLLDIARLRQQAQKLGIR
KLESNEKGGVIEFNEKNNVNPVWLIGLLQKQPQHFRLDGPTRLKFMQDLEERKTRMDWVR
QFMRQLEENAVA
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccgtctatgcctgaacaatatcgatactcattgccggtcaaagccggcgatcag
cgccagcttggcgagttgaccggcgcagcctgcgccaccctggtggcggagatggccgaa
cgccacagcggcccggtggtgctggtggcgcctgacatgcaaaacgcgctgcgtctgaac
gacgagatcaggcagtttaccgacagcatggtgatggggctggcggactgggaaacgctc
ccttacgacagcttctcgccgcatcaggacatcatctcctcccgtcttgccaccctttac
cagttacccaccatgcagcgcggcgtactgatcgtcccggtcagcaccctgatgcagcgc
gtctgtccgcacagcttccttcacggccacgcgctggtgatgaaaaagggccagcgcctg
tcgcgcgatgcgctgcgcgatcagctggagggggccggctaccgccatgtcgatcaagtg
atggagcacggcgaatatgctacccgcggcgcgctgctcgacctgttcccgatgggtagc
gatcagccctaccgccttgatttctttgacgatgaaatcgacagcctgcgcctgttcgac
gttgacagccagcgcacgctggaggaagtggcggccattaacctgctgccggcgcacgag
ttccccaccgaccagaccgctattgagctgttccgcagccagtggcgcgaccgctttgag
gtgaagcgcgatgccgaacacatctatcagcaggtcagtaaagggacgctacctgccggt
atcgaatactggcagccgctgttcttcagcgagccgctgccgccgttattcagctatttc
ccggccagcacgctgatcgtcaacaccggcgatctcgaggccagcgcggaacgattccag
aatgaagcccgcgcccgctttgaaaaccgcggcgtcgacccgatgcgcccgctcctgccg
cctgagctgctgtggctgcgcagcgatgagctattcagcgaactgaaaaaatggccgcgc
gtgcagctgaaaaccgaacgtctggcggacaaagcggcaaatactaatctgggctaccag
acgctgccggacctcgccgtccaggcacagaacaaagcgccgctggataatctgcgccgc
ttcctcgagtcctttaccggtccggtgatcttctcggtggaaagcgaaggccgccgtgaa
gcgctgagcgaaatgctggcgcggattaaagttgcgccaaaacatgtgctgcgtctggag
gaagccaccggcaacggccgctatctgatgattggcgctgctgagcacgggtttatcgac
agccagcgcggcctggcgctgatttgcgagagcgacctgctcggcgagcgggtggcgcgc
cgtcgtcaggattcgcgccgcaccattaaccctgacactctgattcgcaacctcgccgaa
ctgcatatcggccagccggtcgttcacctggaacacggcgtgggccgctacgcgggcatg
actaccctggaagccggcggcatcaccggcgaatatctgatgctgacctacgccaacgat
gccaagctatacgttccggtatcgtccctgcatcttatcagccgctacgccggcggggcg
gaagaaaacgcccccctgcacaagctgggcggcgatgcctggacccgggcgcgacaaaaa
gcggctgagaaagtacgcgacgtggcagccgagctgctggatatctacgcccagcgcgcg
gcgaaggcgggttttgcctttaaacacgaccgcgaacagtatcagctgttctgcgacggt
ttcccatttgaaaccacgccggatcaggcgcaggcgatcaacgccgtcctcagcgatatg
tgccagccgctggccatggaccgcctggtatgcggcgatgtgggcttcggcaagaccgaa
gtggccatgcgcgccgccttcctcgccgtggagaaccacaagcaggtggcggtgctggtg
ccgaccaccctgctggctcagcagcactatgacaatttccgcgatcgtttcgccaactgg
ccggtacgcatcgaaatgttctcccgcttccgcagcgctaaagagcaggcgcagatcctc
gagcaggccgcagaaggcaaaatcgatatcttgatcggcacccacaaactgctgcagagc
gaggtgaagctgcgcgatctcgggctgctgatcgtcgacgaagagcaccggtttggcgtg
cggcataaagagcgcatcaaagcgatgcgcgccgatgtcgatattctgaccctcaccgcc
acgccgatcccgcggacgctgaacatggcgatgagcgggatgcgcgatctgtcgatcatc
gccacgccgccggcgcgccgcctggcggtgaagaccttcgttcgcgaatatgacgccctg
gtggtgcgcgaggcgatcctgcgcgaaacgctgcgcggcggccaggtctactatctattt
aatgacgttgagaacatccagaaagccgccgacaagctggcggagctggtgccggaggcg
cggatcgccatcggtcacggtcagatgagggagcgcgaactggagcgggtgatgaatgac
ttccatcaccaacgcttcaatgtgctggtgtgcaccaccatcatcgaaaccgggatcgac
attcccaccgccaacaccatcatcatcgaacgcgccgaccattttggcctcgcccagctg
caccagctgcgcggccgcgttggccgttcgcatcaccaggcctatgcctggctgctgacg
ccgcatccgaaagcgatgaccaccgatgcgcaaaagcgcctcgaggccattgcgtcgctg
gaagatctcggcgccggctttgcgctggcaacccacgatctggagattcgcggggccggg
gaactgcttggggaagatcagagcggtcagatggaaaccatcggtttctccctgtatatg
gagttgctggagaacgcagtcgatgcgttgaaagccgggcgtgaaccctcgctggaagat
ctcaccagtcagcagacggaggttgaactgcgcatgccttccctgctgcctgatgatttc
atccctgacgtcaatacgcgcctgtcattctataagcgcattgccagcgccaaaaacgaa
cagggtctggaggagatcaaagtcgagctgatcgatcgttttggccgcctgcccgatgcc
gcccgcaacctgctggatatcgcccgtctgcgtcagcaggcgcaaaaattagggatccgc
aagctggaaagcaacgaaaaaggcggcgtgatcgaatttaacgagaaaaacaacgtcaat
ccggtgtggctgatcggcctgctgcagaagcagccccagcacttccgcctggacggtccc
acgcgcctgaagttcatgcaggacctggaggagcgtaaaacgcggatggactgggttcgc
cagtttatgcgtcagctggaagagaacgccgtcgcctga
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