Klebsiella pneumoniae 30684/NJST258_2: KPNJ2_03403
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Entry
KPNJ2_03403 CDS
T03177
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kps
Klebsiella pneumoniae 30684/NJST258_2
Pathway
kps03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kps00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KPNJ2_03403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kps03400
]
KPNJ2_03403
Enzymes [BR:
kps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KPNJ2_03403
DNA repair and recombination proteins [BR:
kps03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KPNJ2_03403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AHM80183
UniProt:
W8UX26
LinkDB
All DBs
Position
3270632..3274090
Genome browser
AA seq
1152 aa
AA seq
DB search
MKPSMPEQYRYSLPVKAGDQRQLGELTGAACATLVAEMAERHNGPVVLVAPDMQNALRLN
DEIRQFTDSMVMGLADWETLPYDSFSPHQDIISSRLATLYQLPTMQRGVLIVPVSTLMQR
VCPHSFLHGHALVMKKGQRLSRDALRDQLEGAGYRHVDQVMEHGEYTTRGALLDLFPMGS
DQPYRLDFFDDEIDSLRLFDVDSQRTLEEVAAINLLPAHEFPTDQTAIELFRSQWRDRFE
VKRDAEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPASTLIVNTGDLEASAERFQ
NEARARFENRGVDPMRPLLPPELLWLRSDELFSELKKWPRVQLKTERLADKAANTNLGYQ
TLPDLAVQAQNKAPLDNLRRFLESFTGPVIFSVESEGRREALSEMLARIKVAPKHVLRLE
EATGNGRYLMIGAAEHGFIDSQRGLALICESDLLGERVARRRQDSRRTINPDTLIRNLAE
LHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGA
EENAPLHKLGGDAWTRARQKAAEKVRDVAAELLDIYAQRAAKAGFAFKHDREQYQLFCDG
FPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLV
PTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQAQILEQAAEGKIDILIGTHKLLQS
EVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSII
ATPPARRLAVKTFVREYDALVVREAILRETLRGGQVYYLFNDVENIQKAADKLAELVPEA
RIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQL
HQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAG
ELLGEDQSGQMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDF
IPDVNTRLSFYKRIASAKNEQDLEEIKVELIDRFGRLPDAVRNLLDIARLRQQAQKLGIR
KLESNEKGGVIEFNEKNNVNPVWLIGLLQKQPQHFRLDGPTRLKFMQDLEERKTRMDWVR
QFMRQLEENAVA
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccgtctatgcctgaacaatatcgatactcattgccggtcaaagccggcgatcag
cgccagcttggcgagttgaccggcgcagcctgcgccactttggtggcggagatggccgaa
cgccacaacggcccggtggtgctggtggcgcctgacatgcaaaacgcgctgcgtctgaac
gacgagatcaggcagtttaccgacagcatggtgatggggctggcggactgggaaacgctc
ccttacgacagcttctcgccgcatcaggacatcatctcctcccgtcttgccaccctttac
cagttacccaccatgcagcgcggcgtactgatcgtcccggtcagcaccctgatgcagcgc
gtctgtccgcacagcttccttcacggccacgcgctggtgatgaaaaagggccagcgcctg
tcgcgcgatgcgctgcgcgatcagctggagggggccggctaccgccatgtcgatcaggtg
atggagcacggcgaatatactacccgcggcgcgttgctcgacctgttcccgatgggtagc
gatcagccctaccgccttgatttctttgacgatgaaatcgacagcctgcgcctgttcgac
gttgacagccagcgcacgctggaggaagtggcggccattaacctgctgccggcgcacgag
ttccccaccgaccagaccgctattgagctgttccgcagccagtggcgcgaccgctttgag
gtgaagcgcgatgccgagcacatctatcagcaggtcagtaaagggacgctacctgccggt
atcgaatactggcaaccgctgttcttcagcgagccgctgccgccgttattcagctatttc
ccggccagcacgctgatcgtcaacaccggcgatctcgaggccagcgcggaacgattccag
aatgaagcccgcgcccgctttgaaaaccgcggcgtcgacccgatgcgcccgctcctgccg
cctgagctgctgtggctgcgcagcgatgagctattcagcgaactgaaaaaatggccgcgc
gtgcagctgaaaaccgaacgtctggcggacaaagcggcgaatactaatctgggctaccag
acgctgccggacctcgccgtccaggcgcagaacaaagcgccgctggataatctgcgccgc
ttcctcgagtcctttaccggtccggtgatcttctcggtggaaagcgaaggccgccgtgaa
gcgctgagcgaaatgctggcgcggattaaagttgcgccaaaacatgtgctgcgtctggag
gaagccaccggcaacggccgctatctgatgattggcgccgccgagcacgggtttatcgac
agccagcgcggcctggcgctgatttgcgagagcgacctgctcggcgagcgggtggcgcgc
cgtcgtcaggattcgcgacgcaccattaaccctgacactctgattcgcaacctcgccgaa
ctgcatatcggccagccggtcgttcacctggaacacggcgtgggccgctacgcgggcatg
actaccctggaagccggcggcatcaccggcgaatatctgatgctgacctacgccaacgat
gccaagctatacgttccggtatcgtccctgcatcttatcagccgctacgccggcggggcg
gaagaaaacgcccccctgcacaagctgggcggcgatgcctggacccgggcgcgacaaaaa
gcggctgagaaagtacgcgacgtggcggccgagctgctggatatctatgcccagcgcgcg
gcgaaggcgggttttgcctttaaacacgaccgcgaacagtatcagctgttctgcgacggc
ttcccatttgaaaccacgccggatcaggcgcaggcgatcaacgccgtcctcagcgatatg
tgccagccgctggccatggaccgcctggtatgcggcgatgtgggcttcggcaagaccgaa
gtggccatgcgcgccgccttcctcgccgtggagaaccacaagcaggtggcggtgctggtg
ccgaccaccctgctggctcagcagcactatgacaatttccgcgatcgtttcgccaactgg
ccggtacgcatcgaaatgctctcccgcttccgcagcgctaaagagcaggcgcagatcctc
gagcaggccgcggaaggcaaaatcgatatcttgatcggcacccacaagctgctgcagagc
gaggtgaagctgcgcgatctcgggctgctgatcgtcgacgaagagcaccggtttggcgtg
cggcataaagagcgcatcaaagcgatgcgcgccgatgtcgatattctgaccctcaccgcc
acgccgatcccgcggacgctgaacatggcgatgagcgggatgcgcgatctgtcgatcatc
gccacgccgccggcgcgccgcctggcggtgaagaccttcgttcgcgaatatgacgccctg
gtggtgcgcgaggcgatcctgcgcgaaacgctgcgcggcggccaggtctactatctgttt
aatgacgttgagaacatccagaaagccgccgacaagctggcggagctggtgccggaggcg
cggatcgccatcggtcacggtcagatgagggagcgcgaactggagcgggtgatgaatgac
ttccatcaccaacgcttcaatgtgctggtgtgcaccaccatcatcgaaaccgggatcgac
attcccaccgccaacaccatcatcatcgaacgcgccgaccattttggcctcgcccagctg
caccaactgcgcggccgcgttggccgttcgcatcaccaggcctatgcctggctgctgacg
ccgcatccgaaagcgatgaccaccgatgcgcaaaagcgcctcgaggccattgcgtcgctg
gaggatctcggcgccggctttgcgctggcaacccacgatctggagattcgcggggccggg
gaactgcttggggaagatcagagcggtcagatggaaaccatcggtttctccctgtatatg
gagctgctggagaacgcagtcgatgcgctgaaagccgggcgtgaaccctcgctggaagat
ctcaccagtcagcagacggaggttgaactgcgcatgccttccctgctgcctgatgatttc
atccctgacgtcaatacgcgcctgtcattctataagcgcattgccagcgccaaaaacgaa
caggatctggaggagatcaaagtcgagctgatcgatcgttttggccgcctgcccgatgcc
gtccgcaacctgctggatatcgcccgtctgcgtcagcaggcgcaaaagttagggatccgc
aagctggaaagcaacgaaaaaggcggcgtgatcgaatttaacgagaaaaacaacgtcaat
ccggtgtggctgatcggcctgctgcagaagcagccccagcacttccgcctggacggtccc
acgcgcctgaagttcatgcaggacctggaggagcgtaaaacgcggatggactgggttcgc
cagtttatgcgccagctggaagagaacgccgtcgcctga
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