Kosakonia pseudosacchari: IP581_02165
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Entry
IP581_02165 CDS
T06897
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
kpse
Kosakonia pseudosacchari
Pathway
kpse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kpse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IP581_02165 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kpse03019
]
IP581_02165 (rnr)
03016 Transfer RNA biogenesis [BR:
kpse03016
]
IP581_02165 (rnr)
Enzymes [BR:
kpse01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
IP581_02165 (rnr)
Messenger RNA biogenesis [BR:
kpse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IP581_02165 (rnr)
Transfer RNA biogenesis [BR:
kpse03016
]
Prokaryotic type
tRNA degradation factors
IP581_02165 (rnr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
TFIIE_beta
Rho_RNA_bind
MetOD2
Motif
Other DBs
NCBI-ProteinID:
QOV64501
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All DBs
Position
472052..474487
Genome browser
AA seq
811 aa
AA seq
DB search
MSQDPFLERESEKYTNPIPSREFILDHLAKREKPASRDELAIELNIEGEEQQEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGVVIGHRDGYGFLRVEGRKDDLYLSSEQMKMCIH
GDQVLAQPLGADRKGRREARIVRVLVPKTGQIVGRYFTDAGVGFVVPDDSRMSFDILIPP
EEVMGARMGFVVVVELTQRPTRRTKAIGKIVEVLGDNMGTGMAVDMALRTHEIPYQWPPE
VEKQVAGLKEQVPEEAKVGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRHGTALDNEARNRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS
SKGRLTGFKFYEAVMSSHARLTYTKVWHILQGDQELREQYAPLVKHIEELHNLYKVLDQA
RAERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKADEP
ALFRIHDKPTTEAITAFRSVLAELGLELPGGNKPEPRDYAELLESIADRPDHEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAKEQGLKGNSTETG
GWHYSMEEVLQLGQHCSMTERRADEATRDVSDWLKCDFMQDQVGNTFPGVIASVTGFGFF
VRLDDLFIDGLVHVSSLDNDYYRFDQIGQRLIGESGGQTYRLGDRVQVKVEAVNMDERKI
DFSLISSERSPRNVGKTERERAKKGSAGKNGSAKKPPRRQMGKKVNFEPDSAFRGEGGKG
KAKKAKKPSAKTQKIAAATKAKRAAKKKTAQ
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatcctttcctcgaacgcgaatctgaaaaatataccaaccccattcccagc
cgcgaattcatcctcgatcacttagccaaacgcgaaaaaccagccagccgggatgaactg
gctattgaactcaatatcgaaggtgaagagcaacaagaagcgctgcgtcgacgtctgcgc
gccatggaacgcgacggacaattagtctttacccgccgtcagtgctacgccttaccggaa
cgtctcgatctgctcaaaggcgtggtgattggtcatcgcgacggctatggttttctgcgc
gttgaaggccgcaaagacgatctttatctctccagcgagcagatgaaaatgtgcattcac
ggcgatcaggtgctggcgcaaccgctgggtgccgatcgtaaaggtcgtcgcgaagcgcgc
atcgtacgcgtactggtgccgaaaaccgggcagatcgttggccgctactttactgacgca
ggcgtcggttttgtcgtgccggatgatagccgcatgagtttcgacatccttatcccgcct
gaagaggttatgggcgcgcgcatgggctttgtcgtggtcgttgagctgacgcagcgtcca
actcgccgcacaaaagcgattggtaaaatcgtcgaagtgcttggcgacaacatgggtacc
ggcatggccgttgacatggcgctgcgcacccatgaaattccttaccagtggccgccggaa
gtggaaaaacaggtcgccgggctgaaagagcaagtgccggaagaggccaaagtcggacgc
gtggatctgcgcgacctgccgctggtcaccattgatggcgaagatgcccgcgactttgac
gacgcggtgtattgcgagaagaaacgcggcggtggctggcgcttgtgggtagcgattgcc
gacgtaagctactacgtacgtcacggtacggcgcttgataacgaagcccgtaatcgcgga
acctcggtctacttcccgtcgcaagtggtgccgatgctgccggaagtgctgtcgaacggt
ctgtgctcgctgaatccgcaagtggatcgcctgtgcatggtctgtgaaatgaccgtctcc
tcaaaagggcgtttaaccggctttaaattctacgaagcggtgatgagttcccacgcacgt
ctgacgtacaccaaagtgtggcatattctgcaaggcgatcaggaactgcgtgagcagtac
gcgccgctggtgaaacacatcgaagaactgcataacctgtataaagtgctcgatcaggcg
cgcgctgagcgcggtggcatttcgtttgagagtgaagaagcgaagtttatcttcaacgcc
gagcgccgcattgagcgcattgagcagactcagcgtaacgatgcgcacaagctcattgaa
gagtgcatgatcctcgccaacatctccgccgcgcgttttgtggagaaagccgacgagccg
gcgctgttccgtattcacgataagcccacgactgaggcgatcaccgcgttccgctccgtg
cttgctgagctgggtctggaactacctggtggcaataaaccggagccgcgcgattacgcc
gagctactggaatcgattgccgatcgcccggatcacgaaatgctgcaaaccatgctgctg
cgctcgatgaaacaggcgatctacgatccggaaaatcgcggccacttcggcctggcgctg
caatcttatgcacactttacgtcaccgattcgtcgctatcccgatttgtcgctgcaccgc
gccattaaatatttactggcgaaagagcaggggctgaagggcaacagcaccgaaacgggc
ggctggcactacagcatggaagaggtgctgcaactgggccagcactgttcgatgaccgaa
cgccgcgccgatgaagccactcgtgatgtttcggactggctgaaatgcgactttatgcag
gatcaggtcggcaacaccttccctggcgttatcgccagcgtcaccggctttggtttcttc
gtgcggctcgacgatctctttatcgacgggctggtacatgtctcctcgctggacaacgat
tactaccgctttgaccagatcggtcagcggttgattggtgaatccggcgggcaaacgtat
cgcctcggcgatcgggtgcaggtgaaagtcgaagcggtcaatatggatgagcgcaagatc
gacttctcgctgatctccagtgagcgcagcccgcgtaacgtggggaaaaccgagcgtgaa
agagcgaaaaaaggttcggcaggcaaaaacggctctgcgaaaaagccgccgcgtcgccag
atgggcaaaaaagtgaatttcgagccagacagcgccttccggggtgaaggtggaaaaggc
aaagcgaaaaaagccaaaaaaccctcggcgaaaacgcaaaaaatcgccgccgcgaccaaa
gcgaaacgcgcggcgaaaaagaaaaccgctcagtaa
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