Kosakonia pseudosacchari: IP581_04430
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Entry
IP581_04430 CDS
T06897
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
kpse
Kosakonia pseudosacchari
Brite
KEGG Orthology (KO) [BR:
kpse00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
kpse03009
]
IP581_04430 (rlmD)
Enzymes [BR:
kpse01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
IP581_04430 (rlmD)
Ribosome biogenesis [BR:
kpse03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
IP581_04430 (rlmD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
PCMT
MTS
RrnaAD
TRM5-TYW2_MTfase
Methyltransf_4
Methyltransf_11
Methyltransf_15
Cons_hypoth95
Methyltransf_ANTKMT
CMAS
Methyltr_RsmB-F
FtsJ
Methyltransf_23
MetW
Ubie_methyltran
Methyltransf_37
Ribosomal_L22
PrmA
TPMT
Methyltransf_32
DHquinase_II
Motif
Other DBs
NCBI-ProteinID:
QOV64916
LinkDB
All DBs
Position
964007..965308
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AA seq
433 aa
AA seq
DB search
MAQFYSAKRRVTTSQKVTVTVTDLDPFGQGVARHNGKALFIPGLLPGETADVVLKEDKRQ
FSRGEVKRRLNDSDERVTPQCLHFGVCGGCQQQHASIALQQRSKSAALARLMKQGVDEVI
AGEPWGYRRRARLSLSWQPKSQSLEMGFRKAGGNDIINVTRCPVLVPRLEALLAPLRECL
SGLQAVRQLGHVELVEADNGPLMVLRHTAALSATDREKLEQFSHSQELSLYLAPQSEILE
QVSGESPCYSSDGLRLTFSPRDFIQVNDGVNQQMVARALEWLDVQPGDRVLDLFCGMGNF
TLPLAKRAASVVGVEGVADLVAKAQDNAQQNGLQNVTFFHENLEEDVTKQHWASRGFDKV
LLDPARAGAAGVMQHILKLSPGRVVYVSCNPATLARDSEALLNAGYQIQRLAMLDMFPHT
GHLESMVLFVNHK
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaattctactctgcaaaacgacgtgtgacgactagtcaaaaagtaaccgtaacc
gtaactgatcttgatccttttgggcagggggttgcgcgccataacgggaaagcgctgttc
attccggggcttttacccggcgaaacggcggacgtggtgcttaaagaggataagcggcag
ttttcacgtggtgaggtgaaacgccgcctgaatgatagcgatgagcgcgttacgccgcag
tgcctgcattttggcgtttgcggtggttgtcagcagcagcatgccagtattgccctgcaa
cagcgcagcaaaagcgcggcgctggcacgtttgatgaaacagggcgttgatgaagtgatt
gcaggcgaaccctggggatatcgccgccgcgcgcggcttagcctgagctggcagcccaaa
agccaaagtctggagatggggtttcgtaaagcgggcggtaacgacattattaatgtcacc
cgctgcccggtgttggtgccccgtcttgaagcattactggcgccgctgcgtgaatgtctg
agcgggttgcaggccgtgcgtcaacttggtcatgtcgagctggtagaggccgataatggc
ccattaatggttttacgtcacaccgctgcattaagtgcaacagacagagaaaaactggaa
cagttttcgcattctcaggaactctctctgtatctcgcgccacaaagcgagatactagaa
caggttagcggggagtctccctgctacagctctgacgggctacgcttaacgttcagcccg
cgggattttattcaggttaacgatggggttaaccagcagatggtggcgcgagcgctggaa
tggctcgatgtgcagcccggcgaccgggtgctggatctgttctgcggcatgggcaatttc
acgctgccactggcgaaacgtgcggccagcgtggtcggagtggagggcgtcgccgatctg
gtggcgaaagcgcaggataacgcgcaacagaatggcttgcagaatgtgacattctttcat
gaaaatctggaggaagatgtcacgaaacagcactgggcgagccgtgggtttgacaaagtt
ttactcgacccggcacgcgcaggcgctgccggggtgatgcaacatattctaaaattatcg
ccgggcagagtggtgtacgtttcctgtaaccccgccacccttgcccgcgacagtgaagcg
ctattgaatgcgggttaccagattcagcggctggcgatgctggacatgttcccgcacact
ggccacctggaatcgatggtgttgtttgtgaatcacaaatga
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