Kosakonia pseudosacchari: IP581_09055
Help
Entry
IP581_09055 CDS
T06897
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kpse
Kosakonia pseudosacchari
Pathway
kpse03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kpse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IP581_09055 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kpse03400
]
IP581_09055 (mfd)
Enzymes [BR:
kpse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IP581_09055 (mfd)
DNA repair and recombination proteins [BR:
kpse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
IP581_09055 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
DUF488
Motif
Other DBs
NCBI-ProteinID:
QOV65772
LinkDB
All DBs
Position
complement(1938284..1941730)
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEQYRYSLPVKAGDQRQFGELTGAACATEVAEIIERHPGPVVLIAPDMQNALRLQDEIG
QFTDNLVMNLADWETLPYDSFSPHQEIISSRLSTLYQLPSMQRGVLIVPVNTLMQRVCPH
SYLHGHALVMKKGQRLSRDELRSQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQPF
RLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEFPTDKNAIELFRSQWRDKFEVKRD
AEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGNLENSAERFQQETL
ARFENRGVDPMRPLLPPETLWLRVDELYSELKKWPRIQLKTEQLADKAAHVNLGYRSLPD
LAVQAQQKSPLDNLRKFLESFAGPVVFSVESEGRREALIELLARIKVAPKRIMRLDEAEA
PGAYLMIGAAEHGFIDTLRSRALICESDLLGERVARRRQDTRRTINPDTLIRNLAELHDG
QPVVHLEHGVGRYAGMTTLEAGGIKGEYLVLTYAGDAKLYVPVSSLHLISRYAGGAEENA
PLHKLGSDAWSRARQKAAEKVRDVAAELLDIYAQRAAKAGFAFKHDKEQYQLFCDSFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTL
LAQQHFDNFRDRFANWPVRIEMLSRFRSAKEQAQILEQAAEGKIDILIGTHKLLQSDVKM
KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDNLVVREAMLREILRGGQVYYLYNDVENIQKAADRLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGQMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
NTRLSFYKRIASAKDENALEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLEG
NEKGGMIEFNAKNHVNPAWLIGLLQKQPQHFRLDGPTRLKFMQDLSERKVRMDWVRNFMQ
QLAENAVA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacaataccgttattccctgcctgtcaaagcaggcgaccagcgccagtttggc
gaactcacaggtgctgcctgcgccaccgaagttgcggaaatcattgaacgccatccgggt
cccgtcgtgctgattgcgccggatatgcaaaacgcgctgcgcttgcaggatgagattggg
caatttaccgataacctggtgatgaacctcgccgactgggaaacgctgccgtatgacagc
ttctcgccacaccaggaaattatctcttcccgcctgtcgacgttatatcaactcccctcc
atgcagcgcggtgtgttgattgttccggtaaatacgctgatgcagcgcgtttgcccgcat
agctacctgcatggccatgcgctggtgatgaaaaaaggccaacgcttgtcgcgcgacgag
ctgcgcagccaactggacagcgcgggttatcgccatgttgatcaagttatggagcatggg
gaatacgccacacgcggcgcgctgctcgatcttttcccgatgggcagtgagcagcctttc
cgcctcgactttttcgacgacgaaattgacagtttgcgtctgtttgacgccgatacccag
cgtacgctggaagaagtcgaggcaattaacttactgcccgcgcacgaatttccgaccgat
aaaaacgccattgagctgttccgcagccagtggcgcgataaatttgaggtcaaacgcgac
gcagagcatatctaccagcaagtcagcaaaggtacgctgcctgccgggattgagtactgg
cagccgctgtttttcagcgaaccgctaccgccgctgttcagctatttcccggcaaatacg
ttgctggtcaacaccggtaatctggaaaacagcgccgagcgcttccagcaggagacgctg
gcgcgttttgagaaccgaggtgttgatcccatgcgccctttgctgccgccggagacgctg
tggcttcgcgttgatgagctctacagcgagctgaagaaatggccgcgcatccagttaaaa
accgaacagctggccgacaaagccgcgcatgttaacctgggttaccggtcattgccggat
ctggcggtacaggcgcagcagaaatcgccgcttgataatctgcgcaagttcctcgaatcc
ttcgccgggccggtggtgttctcggttgagagtgaaggtcgtcgcgaggcgttaattgag
ctactggcgcgcatcaaagttgcgcctaagcgcattatgcgtctcgacgaagccgaagcg
cctggcgcatacctgatgattggcgccgccgaacacggctttatcgatacgttacgcagc
cgggcgttgatttgtgaaagcgatctgctcggtgagcgcgtcgcgcgtcgccgccaggat
acacgacgcactatcaacccggataccttgatccgcaacctcgccgaactgcatgacggt
cagccagtggtgcacctggagcacggcgtgggccggtatgccggcatgaccacgctggaa
gcgggcggcatcaaaggcgaatacctggtgctgacctacgcgggtgatgccaaattgtac
gtgcccgtctcgtcgctgcatttaatcagccgctacgcaggtggtgcggaagagaacgcg
ccgctgcataaactggggagcgatgcctggtcacgcgcgcggcaaaaagcggcggaaaaa
gtgcgcgatgtcgccgcagagctgctggatatttacgcgcagcgcgccgccaaagcgggc
ttcgcctttaaacatgacaaagagcagtatcaacttttctgcgacagtttcccgtttgaa
accacgccggatcaggcgcaagccattaacgcggtactcagcgatatgtgccagccgctg
gcaatggaccggctggtgtgcggcgatgtcggcttcggtaaaaccgaagtggcgatgcgc
gccgcgtttcttgcggttgagaacaataagcaggtggcggtgctggtgccaaccaccctg
ctcgcccagcagcacttcgataacttccgcgatcgcttcgccaactggccggtgcgcatt
gaaatgctttcacgttttcgcagcgccaaagagcaggcacagatcctggagcaggccgcc
gaagggaaaatcgatattctgattggcacgcacaagctgctgcaaagcgatgtcaaaatg
aaggatctcggcctgttaattgtcgatgaagagcaccgtttcggtgtgcgccacaaagag
cgtattaaagcgatgcgcgccgatgtggatatcctgacgctgaccgccacgccgatcccc
cgtacgctgaatatggcgatgagcgggatgcgcgatctgtcgattatcgccaccccaccc
gcgcgccgcctggcagtgaaaacctttgtgcgcgagtacgacaatctggtggtgcgcgag
gcgatgctgcgtgaaatcctgcgcggtgggcaggtctattatctctacaatgatgtggaa
aatatccagaaagccgccgaccggctggcggaactggtgccggaagcgcgcatcgccatc
ggtcacggtcagatgcgtgaacgcgagctggagcgggtgatgaatgatttccaccatcaa
cgtttcaacgtgctggtatgcaccaccattattgaaaccgggatcgatattccgaccgcc
aacaccatcattattgaacgcgccgatcacttcggtcttgcccaactacaccagctgcgc
gggcgtgtcgggcgttcgcaccaccaggcctacgcctggctgctgacgccgcatcctaaa
gccatgaccaccgatgcgcaaaaacgtctggaggccatcgcttcgctggaagatttaggc
gcgggctttgcgctggcaacgcatgacctggagattcgcggtgcgggagaactgctgggc
gaagaccagagtgggcagatggaaaccatcggcttctcgctctatatggagctgctggaa
aacgcggtcgatgcgctgaaagcgggccgcgagccgtcgctggaagatctcaccagccag
caaactgaagttgaattacgtatgccttcgctgttgccggatgactttattcctgacgtc
aacacgcgcttgtcattctataaacgcatcgccagcgccaaagatgagaacgcgctggag
gagattaaagtcgagctgattgaccgtttcggcctgttaccggatccggcgcgtaacctg
ctggatattgcccgcttgcgccagcaggcgcaaaaactggggatccgcaagctggaaggt
aacgagaaaggcggcatgattgagttcaacgcgaaaaatcatgttaacccggcgtggctg
attggcttactgcagaaacaaccgcagcatttccgcctcgatggcccaacgcggttgaag
tttatgcaggatctcagcgagcgcaaagtgcgtatggattgggtacgtaactttatgcag
cagctcgccgaaaacgcggtagcctga
DBGET
integrated database retrieval system
