Kosakonia pseudosacchari: IP581_14450
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Entry
IP581_14450 CDS
T06897
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
kpse
Kosakonia pseudosacchari
Pathway
kpse03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kpse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
IP581_14450 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kpse03400
]
IP581_14450 (sbcB)
Enzymes [BR:
kpse01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
IP581_14450 (sbcB)
DNA repair and recombination proteins [BR:
kpse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
IP581_14450 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
IP581_14450 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
IP581_14450 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
QOV62466
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All DBs
Position
3050741..3052165
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AA seq
474 aa
AA seq
DB search
MSDSAATPTFLFHDYETFGTSSALDRPAQFAAIRTDADFNIIGEPEVFYCQPADDYLPQP
EAVLITGITPQIARAKGENEAAFAKRIHDLFTVPNTCVLGYNNVRFDDEVTRNIFYRNFY
DPYAWSWQNHNSRWDLLDVMRACYALRPDGINWPENEDGLPSFRLEHLTKANGIEHANAH
DAMADVYATIAMAQLVKAKQPKLFDYLFSHRHKQKLATLIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDMSPLLELDTNALRERLYTPKAELGDNAAVPVKLV
HLNKCPVLAQANTLRPQDAERLGINLQHYHDNLQILRDNPHVREKVLAIFAEAEPFVPSD
NVDAQIYNGFFSDADRAAMKILLETEPRNLPALDITFADARIEKLLFNYRARNFPGTLDE
QEQQRWLTHRRNVFTPEFLQQYAETLQALFQQYEGDSEKQALLKALWQYAEEIV
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
gtgtctgattccgccgcaacgcccacttttctctttcacgattatgaaactttcggtacc
agctcggcgctggatcgcccggcgcagttcgccgcgattcgcaccgacgcggatttcaac
attattggcgaaccggaagtcttttattgccaaccggctgacgactatctgccgcagccg
gaagcggtgctgataaccggcatcaccccgcaaatcgcacgcgccaaaggcgagaacgaa
gcggcgttcgccaaacgcattcacgatttgttcactgtgccgaacacctgcgtgctcggt
tacaacaatgtgcgttttgacgacgaagtgacgcgcaatattttctaccgcaacttctac
gatccttatgcctggagctggcaaaaccataactcacgctgggatctgctggacgttatg
cgcgcctgctacgctctgcgcccggacgggattaactggccggaaaacgaggatggtctg
cccagtttccgtcttgagcacctgacaaaagccaacggcattgaacatgccaacgcccac
gatgcaatggcggatgtttacgccacaatcgccatggcgcaactggtgaaagcaaagcag
ccgaagttgttcgactacctgttcagccatcgccataagcagaagctggcgacgctgatt
gatgtgccgcaaatgaaaccgctggtgcatgtctccgggatgtttggcgcctggcgcggg
aacaccagttgggtggcacctctggcctggcacccggaaaaccgcaacgcggtgattatg
gtggacctggcaggcgacatgtcgccgctgctggaactggacaccaatgcgctgcgcgaa
aggctgtatacaccgaaagcggaactcggcgacaacgcagcggtgccggtcaaactggta
catctgaataaatgccctgttctggcgcaggccaatacgctgcgtccgcaggacgccgag
cggctgggcattaaccttcagcattaccatgataatttgcaaatcctgcgcgataacccg
catgtgcgcgagaaagtgctggcaattttcgccgaggcggaaccgtttgtcccttccgat
aacgtggacgcacaaatctataacggctttttcagcgatgctgaccgcgccgcgatgaaa
attttgctggaaaccgagccgcgcaacctgcccgcgctggacatcacttttgccgatgcg
cgtattgaaaaactgctgtttaactaccgggcgcggaacttccccggcacgctggatgag
caggaacagcagcgctggctgacgcaccgccgcaatgtctttacgccggagtttctgcaa
cagtacgccgaaacactccaggcgttgttccagcagtatgaaggggacagtgaaaagcag
gcgctgttgaaagcgctgtggcagtacgccgaagagatagtctga
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