Kosakonia pseudosacchari: IP581_19840
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Entry
IP581_19840 CDS
T06897
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
kpse
Kosakonia pseudosacchari
Pathway
kpse02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
kpse00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
IP581_19840 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kpse03021
]
IP581_19840 (rpoD)
Transcription machinery [BR:
kpse03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
IP581_19840 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
QOV63473
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Position
4206879..4208720
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AA seq
613 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLLLAENSNNTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEQARLSDLITGFVDPNAEEDLAPTA
THVGSELSSEEMDDDEDEEDEEDDDSDDDNSIDPELAREKFAELRTQYELTRDTIKAKGR
SHVAAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERIIMKLCVEQCKMPKK
NFITLFTGNETNETWFNAALAMNKPWSEKLHEVAEEVQRGLMKLQQIEEETGLTIEQVKD
INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE
YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTP
EELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESL
RAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH
PSRSEVLRSFLDD
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaagcttcttgtcacccgtggtaaggagcaaggc
tatctgacctatgccgaggtcaatgaccatctgccggaagatatcgtcgactccgatcag
atcgaagacatcatccaaatgatcaacgacatgggcatccaggtgatggaagaagcaccg
gacgccgatgatctgttgctggccgaaaactccaacaacactgacgaagatgcggaagaa
gccgccgcacaagtgctttccagcgttgaatctgaaatcgggcgaaccactgacccggtg
cgcatgtacatgcgcgaaatgggcaccgttgagctgctgacccgcgaaggcgaaatcgac
atcgctaaacgcatcgaagatggcatcaaccaggttcagtgctctgttgccgaatacccg
gaagcgatcacctatctgctggagcagtatgatcgcgttgaagctgagcaggctcgcctc
tctgatctgatcaccggctttgtcgatccaaacgctgaagaagacctggcgccaaccgcg
acccacgtcggttctgaactctccagcgaagagatggatgatgacgaagacgaagaagat
gaagaagacgacgacagcgatgatgacaacagcatcgatcctgaactggcgcgtgaaaaa
ttcgctgagctacgtacccagtacgaactgactcgcgacactatcaaagccaaaggacgc
agtcacgttgccgcgcaggaagagatcctgaagctgtctgaagtgttcaaacagttccgt
ctggtgccaaaacagttcgattacctggttaacagcatgcgcgtcatgatggatcgcgta
cgtacccaggaacgcatcatcatgaaactgtgcgttgaacagtgcaaaatgccgaagaaa
aacttcattacgctgtttaccggcaacgaaaccaacgaaacctggttcaacgctgcgctg
gccatgaataaaccgtggtcggaaaaactgcatgaagtggcagaagaagttcaacgcggc
ctgatgaagctgcaacagattgaagaagaaaccggcctgaccattgagcaggtaaaagac
atcaaccgtcgtatgtctatcggcgaagcgaaagcgcgtcgtgcgaagaaagagatggtg
gaagcgaacttgcgtctggttatttctatcgccaagaaatacaccaaccgcggtctgcag
ttcctcgatctgattcaggaaggcaacatcggtctgatgaaagcggttgataagttcgaa
taccgccgtggttacaaattctctacctatgcaacctggtggatccgtcaggcgatcacc
cgttccatcgcggatcaggcgcgcaccattcgtattccggtgcatatgattgagacgatc
aacaagctcaaccgtatctcccgccagatgctgcaggaaatgggccgtgaaccgacgccg
gaagagctggctgagcgtatgctgatgccggaagataagatccgtaaggtgctgaaaatt
gccaaagagccgatctccatggaaacaccgatcggtgatgatgaagattcgcatctgggt
gattttatcgaggataccaccctcgagttgccgctggactctgctaccactgaaagtctg
cgcgccgcaacgcacgacgttctggcaggcctgaccgctcgtgaagcgaaagtcctgcgt
atgcgtttcggtatcgatatgaacaccgatcacacgctggaagaagtgggtaaacagttt
gacgtaacccgcgagcgtatccgtcagatcgaagcgaaggcgctgcgtaaactgcgtcat
ccgagccgttctgaagtgctgcgtagcttcctcgacgattaa
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