Kosakonia pseudosacchari: IP581_20435
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Entry
IP581_20435 CDS
T06897
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
kpse
Kosakonia pseudosacchari
Pathway
kpse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kpse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IP581_20435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kpse03019
]
IP581_20435
03009 Ribosome biogenesis [BR:
kpse03009
]
IP581_20435
Enzymes [BR:
kpse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IP581_20435
Messenger RNA biogenesis [BR:
kpse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IP581_20435
Ribosome biogenesis [BR:
kpse03009
]
Prokaryotic type
rRNA helicases
IP581_20435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_C
CMS1
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QOV63580
LinkDB
All DBs
Position
complement(4312547..4314451)
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AA seq
634 aa
AA seq
DB search
MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF
SLPLLNNIDPDLRAPQILVLAPTRELAVQVAEAMTDFSKHMRGVSVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPSAEEEMDI
ETLAAALLKMAQGERPLILPPDAPMRPRREFRERDDRFERRGDRNDRGPRGERSERGGED
RPRRERRDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELP
KGMPGEVLQHFTRTRILNKPMNMQLLGDAQPRERSERRGGGERRGGFGSERREGGRGEGR
RFSGERQEGRSFGGERRAPRRDRDDSAPRRRNDA
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atggctgaattcgaaaccacttttgcagatctgggcctgaaggctcccatccttgaagct
cttaacgatctcggttacgaaaaaccatctccgatccaggctgagtgcattccgcacctg
ctgaacggtcgtgacgtgctgggcatggcccagactggtagcggtaaaaccgcggcgttt
tctctgccgctgctgaacaacatcgatccggacctgcgtgcaccgcagatccttgtgctc
gctccgacccgcgaactggcggttcaggttgctgaagccatgaccgatttctctaaacat
atgcgcggtgtaagcgtggtagccctgtacggtggccagcgttatgacgtgcaattacgc
gctctgcgccaggggccacagattgtcgtcggtacgccgggccgtctgctggatcacctg
aaacgcggcacgctggatctctctaaactgagcggtctggtgctggatgaagccgacgaa
atgctgcgcatgggctttatcgaagacgtagaaaccatcatggcacagatcccggaaggt
catcagaccgctctgttctctgcaaccatgccggaagcaattcgtcgcattactcgtcgc
tttatgaaagagccgcaggaagtgcgcattcaatccagcgtgacgactcgtccggatatc
agccagagctactggactgcatacggcatgcgtaaaaacgaagcactggttcgcttcctg
gaagcagaagattttgatgcggcgatcatcttcgttcgtaccaaaaacgcaacgctggaa
gtggctgaagcactggaacgcagtggctataacagcgctgcgctgaacggtgatatgaac
caggcactgcgtgagcagacactggagcgtctgaaagacggtcgtctggatatcctgatc
gcaactgacgttgcggcacgtggtctggacgttgagcgtatcagcctggtcgttaactac
gacatcccgatggattccgaatcctacgttcaccgtatcggtcgtaccggtcgtgcgggt
cgtgctggtcgtgcgctgctgttcgttgagaaccgcgagcgtcgtctgctgcgcaacatc
gaacgtacgatgaaactgaccattccggaagtagaactgccgaacgcagagctgctgggc
aaacgccgtctggaaaaattcgccgctaaagttcagcaacagctggaaagcagcgatctg
gatcagtaccgcgcgctgctggcaaaaatccagccttctgctgaagaagagatggatatt
gaaacgctggccgctgcactgctgaaaatggcgcagggcgaacgtccgctgatcctgccg
ccggatgcaccgatgcgcccgcgtcgcgaattccgtgaacgtgatgatcgcttcgaacgc
cgtggcgatcgtaacgatcggggcccgcgtggcgaacgttctgaacgtggtggcgaagat
cgtccgcgtcgtgaacgtcgcgatgttggcgaaatggaactgtaccgtattgaagtaggc
cgcgatgatggtgttgaagtccgtcatatcgttggtgctatcgccaacgaaggcgacatc
agcagccgttacatcggtaacatcaagctgttcggtactcactctaccattgagctgccg
aaaggcatgccgggcgaagttctgcagcacttcacccgcacgcgtattctgaacaagccg
atgaatatgcaactgctgggcgatgcacagccgcgtgagcgtagcgaacgccgcggtggc
ggtgagcgtcgtggcggattcggtagtgaacgccgtgaaggtggtcgtggtgaaggtcgt
cgtttcagcggtgagcgtcaggaaggtcgtagttttggtggcgaacgtcgcgcaccgcgc
cgcgatcgtgacgacagcgctccgcgtcgccgtaacgacgcataa
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