Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044 (serotype K1): KP1_2106
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Entry
KP1_2106 CDS
T00910
Symbol
mfd
Name
(GenBank) transcription-repair ATP-dependent coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kpu
Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044 (serotype K1)
Pathway
kpu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kpu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KP1_2106 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kpu03400
]
KP1_2106 (mfd)
Enzymes [BR:
kpu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KP1_2106 (mfd)
DNA repair and recombination proteins [BR:
kpu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KP1_2106 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BAH62816
LinkDB
All DBs
Position
complement(2048497..2051943)
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEQYRYSLPVKAGDQRQLGELTGAACATLVAEMAERHNGPVVLVAPDMQNALRLNDEIR
QFTDSMVMGLADWETLPYDSFSPHQDIISSRLATLYQLPTMQRGVLIVPVSTLMQRVCPH
SFLHGHALVMKKGQRLSRDALRDQLEGAGYRHVDQVMEHGEYATRGALLDLFPMGSDQPY
RLDFFDDEIDSLRLFDVDSQRTLEEVAAINLLPAHEFPTDQTAIELFRSQWRDRFEVKRD
AEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPASTLIVNTGDLEASAERFQNEAR
ARFENRGVDPMRPLLPPELLWLRSDELFSELKKWPRVQLKTERLADKAANTNLGYQTLPD
LAVQAQNKAPLDNLRRFLESFTGPVIFSVESEGRREALSEMLARIKVAPKHVLRLEEATG
NGRYLMIGAAEHGFIDSQRGLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIG
QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA
PLHKLGGDAWTRARQKAAEKVRDVAAELLDIYAQRAAKAGFAFKHDREQYQLFCDGFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL
LAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQAQILKQAAEGKIDILIGTHKLLQSEVKL
RDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDALVVREAILRETLRGGQVYYLFNDVENIQKAADKLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGQMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
NTRLSFYKRIASAKNEQDLEEIKVELIDRFGRLPDAAHNLLDIARLRQQAQKLGIRKLES
NEKGGVIEFNEKNNVNPVWLIGLLQKQPQHFRLDGPTRLKFMQDLEERKTRMDWVRQFMR
QLEENAVA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacaatatcgatactcattgccggtcaaagccggcgatcagcgccagcttggc
gagttgaccggcgcagcctgcgccaccctggtggcggagatggccgaacgccacaacggc
ccggtggtgctggtggcgcctgacatgcaaaacgcgctgcgtctgaacgacgagatcagg
cagtttaccgacagcatggtgatggggctggcggactgggaaacgctcccttacgacagc
ttctcgccgcatcaggacatcatctcctcccgtcttgccaccctttaccagttacccacc
atgcagcgcggcgtactgatcgtcccggtcagcaccctgatgcagcgcgtctgtccgcac
agcttccttcacggccacgcgctggtgatgaaaaagggccagcgcctgtcgcgcgatgcg
ctgcgcgatcagctggagggggccggctaccgccatgtcgatcaggtgatggagcacggc
gaatatgctacccgcggcgcgctgctcgacctgttcccgatgggtagcgatcagccctac
cgccttgatttctttgacgatgaaatcgacagcctgcgcctgttcgacgttgacagccag
cgcacgctggaggaagtggcggccattaacctgctgccggcgcacgagttccccaccgac
cagaccgctattgagctgttccgcagccagtggcgcgaccgctttgaggtgaagcgcgat
gccgaacacatctatcagcaggtcagtaaagggacgctacctgccggtatcgaatactgg
caaccgctgttcttcagcgagccgctgccgccgttattcagctatttcccggccagcacg
ctgatcgtcaacaccggcgatctcgaggccagcgcggaacgattccagaatgaagcccgc
gcccgctttgaaaaccgcggcgtcgacccgatgcgcccgctcctgccgcctgagctgctg
tggctgcgcagcgatgagctattcagcgaactgaaaaaatggccgcgcgtgcagctgaaa
accgaacgtctggcggacaaagcggcaaatactaatctgggctaccagacgctgccggac
ctcgccgtccaggcacagaacaaagcgccgctggataatctgcgccgcttcctcgagtcc
tttaccggtccggtgatcttctcggtggaaagcgaaggccgccgtgaagcgctgagcgaa
atgctggcgcggattaaagttgcgccaaaacatgtgctgcgtctggaggaagccaccggc
aacggccgctatctgatgattggcgctgctgagcacgggtttatcgacagccagcgcggc
ctggcgctgatttgcgagagcgacctgctcggcgagcgggtggcgcgccgtcgtcaggat
tcgcgacgcaccattaaccctgacactctgattcgcaacctcgccgaactgcatatcggc
cagccggtcgttcacctggaacacggcgtgggccgctacgcgggcatgactaccctggaa
gccggcggcatcaccggcgaatatctgatgctgacctacgccaacgatgccaagctatac
gttccggtatcgtccctgcatcttatcagccgctacgccggcggggcggaagaaaacgcc
cccctgcacaagctgggcggcgatgcctggacccgggcgcgacaaaaagcggctgagaaa
gtacgcgacgtggcggccgagctgctggatatctatgcccagcgcgcggcgaaggcgggt
tttgcctttaaacacgaccgcgaacagtatcagctgttctgcgacggtttcccatttgaa
accacgccggatcaggcgcaggcgatcaacgccgtcctcagcgatatgtgccagccgctg
gccatggaccgcctggtgtgcggcgatgtgggcttcggcaagaccgaagtggccatgcgc
gccgccttcctcgccgtggagaaccacaagcaggtggcggtgctggtgccgaccaccctg
ctggctcagcagcactatgacaatttccgcgatcgtttcgccaactggccggtacgcatc
gaaatgctctcccgcttccgcagcgctaaagagcaggcgcagatcctcaagcaggccgcg
gaaggcaaaatcgatatcttgatcggcacccacaagctgctgcagagcgaggtgaagctg
cgcgatctcgggctgctgatcgtcgacgaagagcaccggtttggcgtgcggcataaagag
cgcatcaaagcgatgcgcgccgatgtcgatatcctgaccctcaccgccacgccgatcccg
cggacgctgaacatggcgatgagcgggatgcgcgatctgtcgatcatcgccacgccgccg
gcgcgccgcctggcggtgaagaccttcgttcgcgaatatgacgccctggtggtgcgcgag
gcgatcctgcgcgaaacgctgcgcggcggccaggtctactatctgtttaatgacgttgag
aacatccagaaagccgccgacaagctggcggagctggtgccggaggcgcggatcgccatc
ggtcacggtcagatgagggagcgcgaactggagcgggtgatgaatgacttccatcaccaa
cgcttcaatgtgctggtgtgcaccaccatcatcgaaaccgggatcgacattcccaccgcc
aacaccatcatcatcgaacgcgccgaccattttggcctcgcccagctgcaccagctgcgc
ggccgcgttggccgttcgcatcaccaggcctatgcctggctactgacgccgcatccgaaa
gcgatgaccaccgatgcgcaaaagcgcctcgaggccattgcgtcgctggaagatctcggc
gccggctttgcgctggcaacccacgatctggagattcgcggggccggggaactgcttggg
gaagatcagagcggtcagatggaaaccatcggtttctccctgtatatggagctgctggag
aacgcagtcgatgcgctgaaagccgggcgtgaaccctcgctggaagatctcaccagtcag
cagacggaggttgaactgcgcatgccttccctgctgcctgatgatttcatccctgacgtc
aatacgcgcctgtcattctataagcgcattgccagcgccaaaaacgaacaggatctggag
gagatcaaagtcgagctgatcgatcgttttggccgcctgcccgatgccgcccacaacctg
ctggatatcgcccgtctgcgtcagcaggcgcaaaagttagggatccgcaagctggaaagc
aacgaaaaaggcggcgtgatcgaatttaacgagaaaaacaacgtcaatccggtgtggttg
atcggcctgctgcagaagcagccccagcacttccgcctggacgggccgacgcgcctgaaa
ttcatgcaggacctggaagagcgtaaaacgcggatggactgggttcgccagtttatgcgc
caactggaagagaacgccgtcgcctga
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