Kitasatospora purpeofusca: ACFCLZ_34385
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Entry
ACFCLZ_34385 CDS
T11279
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
kpur Kitasatospora purpeofusca
Pathway
kpur03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
kpur00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ACFCLZ_34385 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kpur03400
]
ACFCLZ_34385 (ligD)
Enzymes [BR:
kpur01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ACFCLZ_34385 (ligD)
DNA repair and recombination proteins [BR:
kpur03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ACFCLZ_34385 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
XHR63438
LinkDB
All DBs
Position
complement(7974030..7975997)
Genome browser
AA seq
655 aa
AA seq
DB search
MTPSARDGSRRTRTEGRLAATGRAASEAAMPQMVVDGRTLALSHLDKVYYPQTGTLKGEV
LRYYAAVHAALLPHLHDRPVSFLRTPDGVAAEVFIAKNPPPGTPGWVRTAEVPSSSGELR
QVVLESGAALLALVNLGCLELHVPQWHTAAPGLADRLVLDLDPGAGATVLTCRTVAALLR
ARLAADGLEAWVKTSGGKGLHLLVPLEPTPSARVSAYAKDLAAELETARPELVVHTMAKA
RRTGRVLVDWSQNAAKKTTAAPYTVRAQQRPTVSAPLSWAELDGAGSAEELVFTIADVPD
RLAAHGDLLAPLLDPARARPLPAATTTRPPRTAPPAAASGKAGQVGKAGKAPPAARPAAR
GPVVLEPPVEVMRPAAVPAVPPADGLGGSGVVYELKLDGFRCVAFARGPARPPFLQSRSG
RDLSAEFPPIAAAVARLPAGLVLDAELVAWHGGRFAFEELLRTRRARAAEDVALGLVAFD
VLALPGRDVRGLALADRRRLLLAALADVPPPVQAVLATTDRAEALTWMERLADTGVEGLV
CKAAGSPYRARGAGRVWVKYRRGDTVDATVRAVTGPPARPRAVVLELDDGRVLLSSPPLS
PPQSRQVAEAAAGRLGAPVHDPQYGSVRPLAAPLRAEVAVTGRPPTALFVRLRGD
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
gtgaccccctcggcccgggacggctcgcgccgcacccgcaccgagggcagactggccgcg
acgggacgcgcagcctcggaggcggcgatgccgcagatggtggtcgacgggcgcacgctc
gcgctctcgcatctggacaaggtgtactacccgcagaccggcaccctcaagggcgaggtg
ctgcgctactacgccgccgtccacgccgcgctgctgccccacctgcacgaccgtccggtg
tccttcctgcgcactccggacggcgtggcggcggaggtcttcatcgccaagaacccgccc
cccgggacccccggctgggtgcggacggccgaagtcccgagcagcagcggcgagctgcgg
caggtggtgctggagagcggcgccgcgctgctggcgctcgtgaacctgggctgtctggag
ctgcacgtgccgcagtggcacaccgccgcgcccgggctggcggaccgcctggtgctggac
ctcgacccgggcgcgggggcgaccgtgctcacctgccgcacggtggccgccctgctgcgc
gcacggctcgccgcggacggcctggaggcctgggtgaagacctccggcggcaagggcctg
catctgctggtgccgctggagccgacgccgagcgcccgggtctccgcctacgccaaggac
ctggccgccgaactggagacggcccgcccggagctggtcgtgcacaccatggcgaaggcc
cgccgcaccggccgggtgctggtcgactggtcgcagaacgcggcgaagaagaccacggcc
gcgccgtacaccgtgcgggcgcagcagcggccgacggtgtcggcgccgctgtcctgggcg
gagctggacggggccgggtcggcggaggagctggtgttcacgatcgccgacgtccccgat
cggctggcggcgcacggtgacctgctcgcgcccctcctcgacccggcgcgcgcccgcccc
ctgcccgccgccaccacgactcgcccgccccgcacggcacccccggccgctgcctcgggc
aaggcaggccaggtgggcaaggcgggcaaggcgcctccggcagcgcgccccgccgcccgc
ggaccggtggtcctggaaccgccggtggaggtgatgcgcccggccgccgtacccgccgtc
ccaccggcggacggcctcggcgggtccggggtggtgtacgagctgaagctggacggcttc
cgctgcgtggccttcgcccgcgggccggcgcgcccgccgttcctgcagtcccgctcgggg
cgggacctctccgccgagttcccgccgatcgccgccgccgtcgcccggctgccggccggg
ctggtgctggacgcggagctggtcgcctggcacggcggccggttcgccttcgaggagctg
ctgcggacccgccgggcccgggccgccgaggacgtggcgctcgggctggtcgccttcgac
gtgctggccctgcccggccgggacgtccgggggctggcgctggccgaccggcggcggttg
ctgctggccgcgctggccgacgtcccgccgccggtccaggcggtcctggcgaccaccgac
cgggccgaggcgctgacctggatggaacggctcgccgacaccggggtggaggggctggtc
tgcaaggcggccggctcgccgtaccgggcccgcggcgccgggcgggtctgggtgaagtac
cggcgcggcgacaccgtggacgcgaccgtgcgcgccgtcaccgggccgcccgcccggccg
cgggcggtggtcctggaactggacgacggccgggtcctgctctcctcgccgccgctctca
ccaccgcagtcccggcaggtggcggaggcggcggccgggcggctcggtgcacctgtccac
gatccccagtacggctccgtccggccgctcgccgccccgctgcgcgccgaggtggccgtg
accggacggcccccgacggcgctcttcgtccggctgcgcggcgactga
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