Klebsiella pneumoniae subsp. pneumoniae KPNIH30: KPNIH30_02320
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Entry
KPNIH30_02320 CDS
T03466
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
kpw
Klebsiella pneumoniae subsp. pneumoniae KPNIH30
Pathway
kpw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kpw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KPNIH30_02320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kpw03019
]
KPNIH30_02320
03016 Transfer RNA biogenesis [BR:
kpw03016
]
KPNIH30_02320
Enzymes [BR:
kpw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
KPNIH30_02320
Messenger RNA biogenesis [BR:
kpw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KPNIH30_02320
Transfer RNA biogenesis [BR:
kpw03016
]
Prokaryotic type
tRNA degradation factors
KPNIH30_02320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
TFIIE_beta
Rho_RNA_bind
MetOD2
Motif
Other DBs
NCBI-ProteinID:
AIX77109
UniProt:
A0A2X3IMN6
LinkDB
All DBs
Position
464187..466619
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AA seq
810 aa
AA seq
DB search
MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAIELNIEGEEQTEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH
GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EEIMGARMGYVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDMALRTHEIPYVWPPA
VEKQVSGLKEQVPEEAKAGRVDLRSLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPGTPLDAEARSRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
SKGRLTGYKFYEAVMSSHARLTYTKVWHMLQGDQELREHYAPLVKHIEELHNLYKVLESA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAQEP
ALFRIHDKPTTEAITSFRTVLAELGLELPGGNKPEPRDYAELLTSIADRPDAEMLQTMLL
RSMKQAVYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAKEQGHKGNSTETG
GWHYSMEEMLQLGQHCSMTERRADEATREVSDWLKCDFMQDQVGNIFSGVIASVTGFGFF
VRLNDLFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVRVEAVNMDERKI
DFTLISSERAPRNVGKTAREKAKKSTSGKPGGRRRQVGKQVNFEPDSAFRKEKETARPKK
EKKAKKPSAKTQKIAAATKAKRAAKKKIAE
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatccattccaggaacgcgaagctgagaagtacgcgaaccctatcccgagc
cgggaatttatcctcgaacatttaactaaacgggaaaagcctgccagccgcgatgagctg
gccatcgagttaaatatcgagggcgaagagcaaaccgaagcgctgcgccgccgcctgcgc
gcgatggagcgcgacggtcagctggtcttcacccgccgccagtgctatgccctgccggaa
cgcctcgatctcctcaaaggaaccgttattggccaccgcgatggctatggtttcctgcgc
gttgaagggcgcaaagacgatctgtacctgtcgtcagaacagatgaaaacctgtattcac
ggcgaccaggtgctggctcagccgctgggcgcggaccgtaagggccgccgcgaagcgcgc
atcgtccgcgtcctcgtgccgaaaaccagccagatagttggccgttacttcaccgacgct
ggcgtcggctttgtcgtcccggacgacagccgcctgagcttcgatatcctgatcccgccg
gaagagataatgggcgcgcggatgggctacgtggtcgtggtcgagctgacccagcgacca
acccgccgcaccaaagcggtgggtaaaatcgtcgaagtgctgggcgacaacatgggcacc
ggcatggccgtcgatatggcgctgcgtacccatgagattccttatgtctggccgccggcg
gtggaaaaacaggtttccggtctcaaagaacaggtgccggaagaggcgaaggccggccgc
gtcgatttacgctcgctgccgctggttaccattgacggcgaagatgcccgcgacttcgat
gacgcggtgtactgcgagaagaaacgcggcggcggctggcgcctgtgggtagccattgcc
gacgtcagctactacgtgcgcccggggacgccgctggatgcggaagcgcgcagtcgtggc
acctcggtctacttcccgtcgcaggtagtgccgatgctgccggaagtgctgtctaacggt
ctatgctcgctgaacccgcaggtcgatcgcctgtgtatggtgtgcgagatgacgatttcg
tcaaaaggccgtctgaccggttataaattctatgaagcggtgatgagttcacatgctcgc
ctgacctacaccaaagtgtggcatatgctgcagggtgaccaggaactgcgcgaacactac
gcgccgctggtgaagcacattgaagagctgcataacctctacaaagtgctggagagcgcc
cgcgaagagcgcggtggtatctcatttgaaagtgaagaagctaaattcatcttcaatgcc
gaacgccgtattgagcgtatcgaacagactcagcgtaacgatgcgcataagctgattgaa
gagtgcatgatcctggcgaacatctccgccgcgcgcttcgttgagaaggcgcaggagccg
gcgctgttccgtatccatgataagccaaccaccgaagcgattacctccttccgtaccgtg
ctggctgagctgggactggagctgcctggcggcaacaagccggagccgcgtgattacgca
gagctgctaacctccatcgccgatcgcccggatgcggaaatgctgcagacgatgctcctg
cgctccatgaagcaggcggtctacgatccggaaaaccgcggtcactttggcctggcgctg
cagtcatacgcccacttcacctcgccgattcgtcgttacccggacctgtcgctgcaccgc
gctatcaagtatctgctggccaaagagcagggacataaaggcaacagcaccgagaccggc
ggctggcactacagcatggaagagatgctccagctgggtcagcactgttcgatgaccgag
cgccgcgccgacgaagcgacgcgcgaagtgtctgactggctgaagtgcgacttcatgcag
gatcaggtgggcaacatcttctccggcgtgatcgccagcgtgaccggctttggcttcttc
gtccgcctgaacgatctgtttatcgacggtctggtgcatgtttccagcctggataacgac
tattatcgtttcgaccaggtggggcagcgtcttattggtgagtccggcggccagacctat
cgcctgggcgaccgcgtggaagtccgtgtggaagcggtcaacatggacgagcggaaaatc
gactttaccctgatctccagcgagcgtgcgccgcgtaatgtcggcaagaccgcccgtgag
aaagcgaaaaagagtacctctggcaagccgggcggccgtcgccgccaggtgggtaagcag
gtaaacttcgagccggacagcgctttccgtaaagagaaagagaccgcccgaccgaagaaa
gagaaaaaagcgaaaaaaccgtcggcgaaaacacagaaaatcgccgccgcgacgaaagcc
aagcgcgcggccaagaagaagatcgccgagtga
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