Klebsiella pneumoniae PMK1: PMK1_ndm00191
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Entry
PMK1_ndm00191 CDS
T03419
Symbol
yjcD
Name
(GenBank) Putative ATP-dependent DNA helicase YjcD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
kpx
Klebsiella pneumoniae PMK1
Pathway
kpx03420
Nucleotide excision repair
kpx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kpx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PMK1_ndm00191 (yjcD)
03430 Mismatch repair
PMK1_ndm00191 (yjcD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kpx03400
]
PMK1_ndm00191 (yjcD)
Enzymes [BR:
kpx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PMK1_ndm00191 (yjcD)
DNA repair and recombination proteins [BR:
kpx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PMK1_ndm00191 (yjcD)
MMR (mismatch excision repair)
Other MMR factors
PMK1_ndm00191 (yjcD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
ResIII
AAA_22
DUF3987
CTLH_Armc9
Motif
Other DBs
NCBI-ProteinID:
AIT04963
UniProt:
A0A7S5GGI0
LinkDB
All DBs
Position
pPMK1-NDM:162308..164107
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AA seq
599 aa
AA seq
DB search
MSSSTEEQERVIQNMDKNTMVIACPGSGKSFTMKEGTKAIFQRHPLARVSLVTFTRAATD
SLKNSLQKMIEPRFLNRIEVDTFHGFIKKMVNQTGWKGGLLIGHKQMAMVSRVQKHLNYH
ESVNDIMPFIDGIGRELNPDIIRIKYTRDQVAFYNEYMSFCKKDNVADFNSLSKYVVGML
SADKMRPLSITHLIVDEVQDTDGIQFTWISEHAKRGINTTIVGDDDQTIYSFRDAGGVKI
FRQFDKAYNPNVFHLTKCFRCAPLILKFADTVIRKNKARYEKSLVSGRNGDKGKVTFIRS
DKADDQFDVIKELVEKNPHDWAILSRNNTTLDKMESYLEVPVTRIGGKSFWEGLEPSNIL
HLFSFFRQPGNIGLMKRVLSFLNEDEQVLDTVWKHMSSQKVTFQQTDLPPDASVLTKTLH
KHMAPMMTDTRVKEEIENRFKKIREWLEMAGYKMSNTKGEPSVTRISLMSCYRWAMKDGW
LKMLNIAAGMTMGNKKESSETEQSGICLCTLHGSKGLEWKKVLIINCNHDQIPSPKVIGD
EGIEEERRLFFVGMTRAELELYITWHGKPSAFITESFPKVVELSEENPCIDGSEDMCLQ
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcgagtacagaagaacaagagcgtgttatacaaaatatggataaaaacacgatg
gtcattgcctgtccggggagtggcaaatctttcaccatgaaggagggaacaaaagccatt
tttcaacgtcatccattggcccgagtatccctggtaacctttacccgtgcggccacagac
tctttaaaaaatagcctccagaaaatgatagagccgaggtttctcaaccgtatagaggtc
gatacctttcacggttttataaaaaaaatggtaaaccagaccggttggaaaggagggctt
ctaatcggacacaaacaaatggcgatggtatcacgggtacaaaaacatcttaactaccat
gaaagtgtgaacgacataatgccattcatcgacggcattggccgggagcttaacccggac
attatcaggattaaatatacacgcgaccaggtggcgttctacaacgagtacatgagcttt
tgcaaaaaggataatgttgcagattttaactcactttcaaagtatgtagtgggcatgttg
agtgccgataagatgaggcctttaagtattactcatctgattgttgatgaagtacaggac
accgatggtattcaattcacctggatatctgagcacgcaaagaggggcatcaacaccaca
atcgtaggcgatgatgaccagacaatatacagtttcagagatgcaggtggagttaagatc
tttcgtcagtttgataaagcatataatcctaacgtttttcacctgaccaaatgtttcagg
tgtgcaccattgatccttaaatttgctgatacagtgatcagaaagaacaaagcccgctat
gaaaagagtctcgtgtcaggcagaaatggggataaaggaaaagtaacttttataagatcg
gataaggcagacgaccaatttgatgtgatcaaggagctggtggagaaaaaccctcatgat
tgggcgattttaagccgaaacaacacgacactcgacaagatggaaagttatcttgaagtt
ccggttacgaggatagggggaaaatccttctgggagggattagagccaagtaacattctc
catctgttctcctttttccgacagccaggtaacatcggtctgatgaaacgagttctatct
ttcctcaatgaggatgaacaagttttggacacagtgtggaagcatatgagttcccaaaaa
gttacttttcaacaaactgatttacctcctgatgcatcagtccttaccaaaaccctacac
aagcacatggcaccgatgatgactgatacacgagtcaaagaagaaattgaaaaccgtttt
aaaaaaatcagagaatggttagaaatggccgggtataagatgtccaatacgaaaggtgaa
ccgtcagtaacccggatttcattaatgtcatgttaccgttgggcaatgaaagatggatgg
cttaagatgctaaatattgcagctggcatgaccatgggtaacaagaaggaatctagtgaa
acagagcaaagcggcatatgtctctgcacgctccatggctccaaggggctagaatggaaa
aaagtactaatcattaactgcaaccatgatcaaataccctcaccaaaagttatcggtgat
gaaggtatagaagaggaacgacgtttattttttgttggtatgacaagagcagagcttgaa
ctttacataacctggcatgggaaaccatcagcgttcatcacggagtcgttcccgaaagta
gttgaattgtcggaagaaaacccatgtattgatggaagtgaagatatgtgtttacaatga
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