Klebsiella pneumoniae subsp. pneumoniae KPNIH27: KPNIH27_09265
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Entry
KPNIH27_09265 CDS
T03370
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
kpz
Klebsiella pneumoniae subsp. pneumoniae KPNIH27
Pathway
kpz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kpz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KPNIH27_09265 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kpz03019
]
KPNIH27_09265 (rne)
03009 Ribosome biogenesis [BR:
kpz03009
]
KPNIH27_09265 (rne)
Enzymes [BR:
kpz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KPNIH27_09265 (rne)
Messenger RNA biogenesis [BR:
kpz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KPNIH27_09265 (rne)
Ribosome biogenesis [BR:
kpz03009
]
Prokaryotic type
rRNA processing factors
KPNIH27_09265 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AIA41501
LinkDB
All DBs
Position
complement(1955125..1958358)
Genome browser
AA seq
1077 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKRAAVSAIESRQGDVRVIIVPNDEMQ
TPHYSVLRVRKGEETSTLSYLLPKLHEEEMALPGDDEPAERKRPEQPALAAFVMPDAPPA
PMLEEPAAAPVAAAAPVAAAAPAQPGLLSRFFSALKNIFSGAEEAKPAEVQVEKKAEEKP
ERQQERRKPRANNRRDRNDRRDNRDNRDNRDNRDNRDTRADNAEGREPRESREENRRNRR
EKPSQNVEARDVRQTSGDDAEKAKSRDEQQPRRERTRRRNDDKRQAQQEAKAQTREEPVV
QETEQEERVQTLPRRKPRQLAQKVRVESAVVEPVAEIVPEAVVAEVIAPHSEPVKAELPA
GGESVADQDENGESREANGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACAS
PEMASGKVWIRYPVVRPQDPQPEEVQVQEASVAKTVEAVAAPVAVVETVTAAPVTVEPAT
MEPATAEPVVVEPVAAAEPLVVDAAEVAAPAAVEPAPQEPVTEAPAVEAPQAIAPVTLDA
EPVVVEPEAVETTPVVAAPVETIAPAAETVEQAPVIEAAPAEPVKAEPPVSKPVVVAGHR
HATAPMTRAPAPDYVPEAPRHSTWVRPPFAFEGKGAAGGHSATHKATAEPTRPQPVE
NT seq
3234 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaggaagagttgcgcgtcgcccttgttgat
gggcagcgcctgtacgacctggatatcgaaagccccgggcacgaacagaaaaaagcgaac
atctacaaaggcaaaatcacccgcattgaacccagccttgaagccgcgtttgttgattac
ggcgccgagcgtcatggtttcctccccctcaaagaaatcgcccgcgaatacttccccgcc
aactacaatgcgcatggtcgtcctaatatcaaagacgtactgcgggaaggtcaggaagtt
atcgtgcagattgataaagaagaacgcggcaacaaaggcgctgcgctcaccacctttatc
agcctggcgggcagctatctggtactgatgccgaacaacccgcgcgccgggggaatttcc
cgccgtatcgagggcgacgaccgtaccgaactgaaagaagcgctggcgagcctggagctt
ccggacggcatgggcctgatcgttcgcaccgctggcgtcggcaaatccgccgaagccctg
cagtgggacctgagcttccgcctgaagcactgggaagcgattcagaaagccgcggaaagc
cgtccggcgccgttcctgatccaccaggaaagcaacgtcattgtccgcgccttccgtgac
tacctgcgccaggacatcggcgaaatcctgatcgataacccgaaagtgcttgagctggcg
cgccagcatatcgccgcgctgggtcgtccggatttcagcagcaaaatcaaactgtacacc
ggtgaaatcccgctgttcagccattatcagatcgaatcgcaaattgagtccgccttccag
cgcgaagtgcgcctgccttccggcgggtctatcgttatcgatagcaccgaagcgctgacc
gcgatcgatatcaactccgcccgcgccacccgcggcggcgatatcgaagagacagccttc
aataccaacctcgaagcggctgacgaaattgcccgccagctgcgtctgcgcgacctcggc
ggcctgatcgttatcgacttcatcgatatgaccccggttcgccaccagcgcgccgtggag
aatcgtctgcgcgaagccgtccgtcaggaccgggcgcgcattcagatcagccatatttcg
cgcttcggcctgctggagatgtcccgtcagcgcctgagcccgtcgctgggcgagtccagc
caccacgtctgcccgcgctgctccggcaccggcaccgtgcgtgataacgaatcgctgtcg
ctctctattctgcgtctgatcgaagaagaagcgctgaaagagaataccaaagaagtccac
gccattgttccggtaccgatcgcctcctatctgctgaacgaaaaacgtgccgcagtgagc
gctatcgaatcccgtcagggcgatgtgcgcgttattatcgtgccaaacgacgaaatgcaa
acgccgcactactccgtcctgcgcgtgcgcaaaggtgaagaaacctcaacgctgagctat
ctgctgccgaagctgcatgaagaagagatggcgctgccaggcgacgatgagccggcggag
cggaaacgtccggaacagccggccctggccgcttttgtcatgccagatgcgccgccagcc
ccgatgctcgaagagcctgccgccgcgcctgtcgccgcagcggcaccggtcgcggccgcc
gcaccggcgcagcctggcctgctctcacgcttcttcagcgcgctaaagaatatcttctct
ggcgccgaagaggccaaaccggctgaagttcaggtcgagaagaaagcggaagaaaaaccg
gagcgtcagcaggagcgtcgtaaaccgcgcgccaacaaccgccgcgaccgcaacgaccgc
cgtgataaccgcgacaatcgtgacaaccgcgataaccgtgacaatcgcgacacccgtgcg
gacaatgccgagggccgtgaaccgcgcgaatcgcgtgaagagaaccgtcgcaaccgtcgc
gagaagccgtcgcagaacgtggaagcccgtgatgttcgccaaacctcaggcgacgacgcg
gagaaagcgaaatcccgtgacgagcagcagccgcgccgcgaacgcacccgccgccgcaat
gacgacaaacgtcaggcgcagcaggaagccaaagcgcagactcgcgaagagccggttgtg
caggagacggagcaggaagagcgtgtacaaactctgccgcgtcgtaaaccgcgccagctg
gcacagaaagtgcgcgttgagtccgctgtcgtcgagccagttgccgagatcgtgccagaa
gccgtagtggctgaagttatcgctccgcacagcgagccggtgaaagccgagctgccggca
gggggggagagcgtggcggaccaggacgaaaatggcgaatcccgtgaagcgaacggtatg
ccgcgtcgctcacgtcgctccccgcgtcacctgcgcgtcagcggtcagcgtcgtcgtcgc
tatcgtgacgaacgctatccgacccagtcgcctatgccgctgaccgtagcctgcgcatcg
ccggagatggcttccggtaaagtctggatccgctacccggtggttcgtccgcaggatccg
cagccggaagaggttcaggttcaggaagccagcgtcgcgaaaactgtcgaggccgtagcg
gccccggttgccgtcgttgaaaccgttaccgctgctccggtcaccgtcgagccggctacc
atggaaccagcaaccgctgagccggtagtcgtcgagccggtagcggccgccgagccgctg
gtcgttgatgctgcggaagttgccgcgccagcagccgtcgagccagcgcctcaggagccg
gtcaccgaagcaccggctgtcgaagcgcctcaggctatcgcgccagtgacgctcgacgcc
gagccggtggtggtagaacctgaagcggtggaaacgacgcctgtcgttgcagcgccagtg
gaaaccatcgccccggccgcagaaaccgtggagcaagcgccagtgatcgaagcggcccct
gccgaaccggtcaaagccgagcccccggtgagcaagccggtcgtagtggcgggtcatcgc
catgccaccgcgccaatgacccgtgcgccagctccggactatgtcccggaagcaccgcgt
cacagcacctgggtgcgcccgccgttcgcctttgaaggtaaaggcgccgccggtggtcat
agcgcgacccataaagccaccgctgaaccgactcgcccacagcccgtcgagtaa
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