Klebsiella pneumoniae subsp. pneumoniae KPNIH27: KPNIH27_09410
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Entry
KPNIH27_09410 CDS
T03370
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kpz
Klebsiella pneumoniae subsp. pneumoniae KPNIH27
Pathway
kpz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kpz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KPNIH27_09410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kpz03400
]
KPNIH27_09410
Enzymes [BR:
kpz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KPNIH27_09410
DNA repair and recombination proteins [BR:
kpz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KPNIH27_09410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AIA41529
LinkDB
All DBs
Position
complement(1984635..1988081)
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEQYRYSLPVKAGDQRQLGELTGAACATLVAEMAERHNGPVVLVAPDMQNALRLNDEIR
QFTDSMVMGLADWETLPYDSFSPHQDIISSRLATLYQLPTMQRGVLIVPVSTLMQRVCPH
SFLHGHALVMKKGQRLSRDALRDQLEGAGYRHVDQVMEHGEYATRGALLDLFPMGSDQPY
RLDFFDDEIDSLRLFDVDSQRTLEEVAAINLLPAHEFPTDQTAIELFRSQWRDRFEVKRD
AEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPASTLIVNTGDLEASAERFQNEAR
ARFENRGVDPMRPLLPPELLWLRSDELFSELKKWPRVQLKTERLADKAANTNLGYQTLPD
LAVQAQNKAPLDNLRRFLESFTGPVIFSVESEGRREALSEMLARIKVAPKHVLRLEEATG
NGRYLMIGAAEHGFIDSQRGLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIG
QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA
PLHKLGGDAWTRARQKAAEKVRDVAAELLDIYAQRAAKAGFAFKHDREQYQLFCDGFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL
LAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQAQILEQAAEGKIDILIGTHKLLQSEVKL
RDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDALVVREAILRETLRGGQVYYLFNDVENIQKAADKLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGQMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
NTRLSFYKRIASAKNEQDLEEIKVELIDRFGRLPDAARNLLDIARLRQQAQKLGIRKLES
NEKGGVIEFNEKNNVNPVWLIGLLQKQPQHFRLDGPTRLKFMQDLEERKTRMDWVRQFMR
QLEENAVA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacaatatcgatactcattgccggtcaaagccggcgatcagcgccagcttggc
gagttgaccggcgcagcctgcgccactttggtggcggagatggccgaacgccacaacggc
ccggtggtgctggtggcgcctgacatgcaaaacgcgctgcgtctgaacgacgagatcagg
cagtttaccgacagcatggtgatggggctggcggactgggaaacgctcccttacgacagc
ttctcgccgcatcaggacatcatctcctcccgtcttgccaccctttaccagttacccacc
atgcagcgcggcgtactgatcgtcccggtcagcaccctgatgcagcgcgtctgtccgcac
agcttccttcacggccacgcgctggtgatgaaaaagggccagcgcctgtcgcgcgatgcg
ctgcgcgatcagctggagggggccggctaccgccatgtcgatcaggtgatggagcacggc
gaatatgctacccgcggcgcgctgctcgacctgttcccgatgggtagcgatcagccctat
cgccttgatttctttgacgatgaaatcgacagcctgcgcctgttcgacgttgacagccag
cgcacgctggaggaagtggcggccattaacctgctgccggcgcacgagttccccaccgac
cagaccgctattgagctgttccgcagccagtggcgcgaccgctttgaggtgaagcgcgat
gccgagcacatctatcagcaggtcagtaaagggacgctacctgccggtatcgaatactgg
caaccgctgttcttcagcgagccgctgccgccgttattcagctatttcccagccagcacg
ctgatcgtcaacaccggcgatctcgaggccagcgcggaacgattccagaatgaagcccgc
gcccgctttgaaaaccgcggcgtcgacccgatgcgcccgctcctgccgcctgagctgctg
tggctgcgcagcgatgagctattcagcgaactgaaaaaatggccgcgcgtgcagctgaaa
accgaacgtctggcggacaaagcggcaaatactaatctgggctaccagacgctgccggac
ctcgccgtccaggcgcagaacaaagcgccgctggataatctgcgccgcttcctcgagtcc
tttaccggtccggtgatcttctcggtggaaagcgaaggccgccgtgaagcgctgagcgaa
atgctggcgcggattaaagttgcgccaaaacatgtgctgcgtctggaggaagccaccggc
aacggccgctatctgatgattggcgctgccgagcacgggtttatcgacagccagcgcggc
ctggcgctgatttgcgagagcgacctgctcggcgagcgggtggcgcgccgtcgtcaggat
tcgcgacgcaccattaaccctgacactctgattcgcaacctcgccgaactgcatatcggc
cagccggtcgttcacctggaacacggcgtgggccgctacgcgggcatgactaccctggaa
gccggcggcatcaccggcgaatatctgatgctgacctacgccaacgatgccaagctatac
gttccggtatcgtccctgcatcttatcagccgctatgccggcggggcggaagaaaacgcc
cccctgcacaagctgggcggcgatgcctggacccgggcgcgacaaaaagcggctgagaaa
gtacgcgacgtggcggccgagctgctggatatctacgcccagcgcgcggcgaaggcgggt
tttgcctttaaacacgaccgcgaacagtatcagctgttctgcgacggcttcccatttgaa
accacgccggatcaggcgcaggcgatcaacgccgtcctcagcgatatgtgccagccgctg
gccatggaccgcctggtgtgcggcgatgtgggcttcggcaagaccgaagtggccatgcgc
gccgccttcctcgccgtggagaaccacaagcaggtggcggtgctggtgccgaccaccctg
ctggctcagcagcactatgacaatttccgcgatcgtttcgccaactggccggtacgcatc
gaaatgctctcccgattccgcagcgctaaagagcaggcgcagatcctcgagcaggccgcg
gaaggcaaaatcgatatcttgatcggcacccacaagctgctgcagagcgaggtgaagctg
cgcgatctcgggctgctgatcgtcgacgaagagcaccggtttggcgtgcggcataaagag
cgcatcaaagcgatgcgcgccgatgtcgatatcctgaccctcaccgccacgccgatcccg
cggacgctgaacatggcgatgagcgggatgcgcgatctgtcgatcatcgccacgccgccg
gcgcgacgcctggcggtgaagaccttcgttcgcgaatatgacgccctggtggtgcgcgag
gcgatcctgcgcgaaacgctgcgcggcggccaggtctactatctgtttaatgacgttgag
aacatccagaaagccgccgacaagctggcggagctggtgccggaggcgcggatcgccatc
ggtcacggtcagatgagggagcgcgaactggagcgggtgatgaatgacttccatcatcaa
cgcttcaatgtgctggtgtgcaccaccatcatcgaaaccgggatcgacattcccaccgcc
aacaccatcatcatcgaacgcgccgaccattttggcctcgcccagctgcaccagctgcgc
ggccgcgttggccgttcgcatcaccaggcctatgcctggctgctgacgccgcatccgaaa
gcgatgaccaccgatgcgcaaaagcgcctcgaggccattgcgtcgctggaagatctcggc
gccggctttgcgctggcaacccacgatctggagattcgcggggccggggaactgcttggg
gaagatcagagcggtcagatggaaaccatcggtttctccctgtatatggagttgctggag
aacgcagtcgatgcgttgaaagccgggcgtgaaccctcgctggaagatctcaccagtcag
cagacggaggttgaactgcgcatgccttccctgctgcctgatgatttcatccctgacgtc
aatacgcgcctgtcattctataagcgcattgccagcgccaaaaacgaacaggatctggag
gagatcaaagtcgagctgatcgatcgttttggccgcctgcccgatgccgcccgcaacctg
ctggatatcgcccgtctgcgtcagcaggcgcaaaagttagggatccgcaagctggaaagc
aacgaaaaaggcggcgtgatcgaatttaacgagaaaaacaacgtcaatccggtgtggctg
atcggcctgctgcagaagcagccccagcacttccgcctggacggtcccacgcgcctgaag
ttcatgcaggacctggaggagcgtaagacgcggatggactgggttcgccagtttatgcgt
cagctggaagagaacgccgtcgcctga
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