Klebsiella quasipneumoniae: AVR78_01245
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Entry
AVR78_01245 CDS
T04389
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
kqu
Klebsiella quasipneumoniae
Pathway
kqu02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
kqu00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AVR78_01245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kqu03021
]
AVR78_01245
Transcription machinery [BR:
kqu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AVR78_01245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_SUN2
Motif
Other DBs
NCBI-ProteinID:
AMR13067
UniProt:
A0A1C1EY49
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All DBs
Position
3121944..3123785
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AA seq
613 aa
AA seq
DB search
MEQNPQSQLKLLVQRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA
KRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDMAPTATH
VGSELSQEEMDDDEDEDEDEDADDNSDDDNSIDPELAREKFAELRTQYELTRDTIKAKGR
SHAAAQEEILKLSEVFKQFRLVPKQFDYLVNSMRSMMDRVRTQERIIMKLCVEQCKMPKK
NFITLFTGNETSETWFNAAVAMNKPWSEKLLEVKEDVQRGLQKLQQIEEETGLTIEQVKD
INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE
YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTP
EELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESL
RAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH
PSRSEVLRSFLDD
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaagcttcttgtccaacgtggtaaggagcaaggc
tatctgacctatgccgaggtcaatgaccatctgccggaagatatcgtcgattccgatcag
atcgaagacatcatccaaatgatcaacgacatgggcattcaggtgatggaagaagcaccg
gatgccgatgatctgatgcttgccgaaaacaccgcggatgaagatgctgccgaagccgcc
gcgcaggtgctctccagcgtggaatccgaaatcgggcgtacgaccgacccggtgcgcatg
tacatgcgtgaaatgggtaccgtagagctgctgacccgtgaaggcgaaatcgacatcgcc
aaacgcattgaagacggcatcaaccaggtgcagtgctccgttgccgaatacccggaagcg
atcacctacctgcttgagcagtacgaccgcgtggaagcggaagaagcccgtctgtccgat
ctgatcaccggtttcgtcgatccgaatgccgaagaagatatggcgccgaccgccacccac
gttggctccgagctgtctcaggaagagatggatgacgacgaagacgaagacgaagatgaa
gacgccgacgacaacagcgatgacgacaacagcatcgaccctgagctggcccgtgagaag
ttcgccgagctgcgtacccagtacgagctgacgcgcgacactatcaaagccaaaggtcgt
agccatgccgccgcccaggaagagatcctgaagctgtctgaagtcttcaagcagttccgc
ctggtgccgaagcagttcgattacctggtcaacagcatgcgtagcatgatggatcgcgtt
cgtactcaggaacgtatcatcatgaagctgtgcgttgagcagtgcaaaatgccgaagaaa
aacttcatcaccctgttcaccggcaacgaaaccagcgaaacctggttcaacgccgcggtg
gcgatgaacaagccgtggtccgagaagctgctggaagtgaaagaagacgtgcagcgcggc
ctgcagaagctgcagcagatcgaagaagagaccggcctgaccatcgagcaggtgaaggat
atcaaccgtcgcatgtccatcggtgaagcgaaagcccgccgtgcgaagaaagagatggtg
gaagcgaacctgcgtctggttatctcgatcgccaagaaatacaccaaccgcggtctgcag
ttcctcgacctgattcaggaaggcaacatcggtctgatgaaagcggtggataagttcgaa
taccgtcgcggctacaagttctcgacctacgctacctggtggatccgtcaggcgatcacc
cgctccatcgcggatcaggcgcgcaccatccgtattccggtgcatatgattgagaccatc
aacaagctcaaccgtatctcccgtcagatgctgcaggagatgggccgtgaaccgaccccg
gaagagctggctgagcgcatgctgatgccggaagacaaaatccgtaaagtgctgaagatc
gccaaagagcctatctccatggaaacgccgatcggcgacgatgaagattcgcatctgggg
gatttcatcgaggataccaccctcgagctgccgctggattccgcgaccaccgagagcctg
cgtgcggcaacgcacgacgtgctggccggccttaccgctcgtgaagcgaaagtcctgcgt
atgcgtttcggtatcgacatgaacaccgaccacacgctggaagaagtgggtaaacagttc
gacgttactcgcgaacgtatccgtcagatcgaagcgaaggcgctgcgtaaactgcgccac
ccgagccgttctgaagtgctacgtagcttcctcgacgattaa
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