Klebsiella quasipneumoniae: AVR78_02135
Help
Entry
AVR78_02135 CDS
T04389
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
kqu
Klebsiella quasipneumoniae
Brite
KEGG Orthology (KO) [BR:
kqu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kqu03019
]
AVR78_02135
Messenger RNA biogenesis [BR:
kqu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AVR78_02135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAPES4
GDPD
Motif
Other DBs
NCBI-ProteinID:
AMR13231
UniProt:
A0A1C3Q8S6
LinkDB
All DBs
Position
complement(3298111..3300051)
Genome browser
AA seq
646 aa
AA seq
DB search
MRLTTKFSAFITLLTSLTIFVTLIGASLSFYNGIENKVENRVQAVATMLDNRLITTSFDK
LEPQLDELMTPIEIVHIDFMLNGKPLYSHSRTDSYRPLGSHEQFREITVPSLKHPGITLH
LVYVDPMVNYFRSLSITAPLSISIGFMVVIIFFAVRWIRRQLAGQELLELRSTRILSGER
GPQVRGSVYEWPASTSSALDMLLSELQFASDQRSRMDTLIRSYAAQDSKTGLNNRLFFDN
QLATLLEDQEKVGAYGIVMMIRLPEFDLLRDNWGRAAAEEHYFTLINLLSTFIMRYPGAL
LARYHRSDFAVLLPHRTLKEADSIAGLLLKAMDALPPTRILDRDDMMHIGICSFRSGQSA
AQVMEHAEAATRNAVLQGSNSWSVYDDTLPEKGRGNVRWRTLIEQMLSRGGPRLYQKPAV
TRDGRVHHRELMSRMYDGKEEVIAAEYMPMVLQFGLAEEYDRLQVTRLLPFLGFWPEENL
ALQLSVESLIRPRFQRWLRDALMQCEKSQRQRIIFELAEADVCQYIGRLQPVMRLVNALG
VRVAVVQAGLTLVGTSWIKQLDAELIKLHPGLARNIEKRSENQLLVQSLVEACKGMPMQV
FATGVRSRSEWLVLSQCGVTGGQGEFFAASQPLDTNVKKYSQRYSV
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgcgattaacgacgaagttctcagcctttatcacgctgctaactagcctgaccatcttt
gtcacgctgattggcgcttcgctgagtttttacaacggcattgagaacaaggtcgaaaac
cgggttcaggcggtggcgaccatgctggataaccggctcatcaccacctcttttgataag
cttgagccgcagctggatgagctgatgacgccgatagagatcgtgcatatcgatttcatg
cttaacggtaaaccgctctacagccactcccgaaccgacagctaccgcccgctgggcagt
catgagcaattccgtgagatcacggtcccgtcgttgaaacatcccggtatcaccctgcat
ctggtctacgttgacccgatggtgaactatttccgttcgctgtcaatcaccgccccgctg
tcgatctccatcggcttcatggtggtgattattttcttcgccgtccgctggatacgccgc
cagctggcaggtcaggaactgcttgagcttcgttccacgcgcatcctgagcggcgagcgc
gggccgcaggtgcgcgggtcagtctatgaatggcctgccagcaccagtagcgcgctggat
atgctgctgtcggagctgcaattcgccagcgatcagcgcagccggatggatacgctgatt
cgctcctatgcggcacaggattccaaaaccgggctgaacaatcgcctgttttttgacaat
cagttggccacgctgctggaagatcaggagaaggtgggggcgtacggcatcgtgatgatg
atccgtctgccggagtttgatctgctgcgggacaactggggacgagcggcggccgaagaa
cattacttcacgctaatcaacctgctctctacctttattatgcgttaccctggcgcgctg
ctggcccgctatcaccgtagcgacttcgccgtgctgctgccgcaccgcacgttaaaagag
gcggatagcatcgccggactgttgctgaaggccatggacgcgctgcctccgacgcgcatt
ctcgatcgtgacgatatgatgcatatcggcatctgttctttccgcagtggacaatcggcg
gcgcaagtgatggaacatgctgaagcagcaacgcgcaacgcggtgctgcagggcagcaac
agctggtcggtctatgacgatacccttccggagaaaggccgcggcaacgttcgctggcgg
acgctgatcgaacagatgctgagccgcggcgggccgcggttgtatcagaaacccgccgtc
actcgcgatggccgggtgcatcaccgtgaactgatgtcgcggatgtacgacggtaaggaa
gaggtgatcgccgccgagtatatgccgatggtgctgcagtttggcctggcggaggagtat
gaccgcctgcaggtgacgcgcctgctgccgtttttaggcttctggcccgaggagaatctg
gcgctccagctgtcggtggagtcgctgatccgtccgcgattccagcgctggctgcgtgat
gctctgatgcagtgcgaaaaatcgcagcgtcagcggattatttttgaacttgctgaggca
gatgtttgtcaatatatcggccgtctacagccggttatgcggttggttaacgcgcttggc
gttcgggtggcggtggttcaggcagggttaaccctggtgggaactagctggatcaagcag
ctggatgcggagctgatcaaactgcatccggggctggcgcgcaatatcgaaaagcgcagc
gagaaccagctgctggtgcaaagcctggtggaagcctgtaaaggcatgcctatgcaagtt
tttgcgacgggcgtacgcagccgcagcgagtggctggtactgtcccaatgcggtgtcacg
ggcgggcagggggaattttttgccgcctcacagccacttgacacaaatgtgaaaaaatat
tcgcaaagatactcggtttga
DBGET
integrated database retrieval system
