Klebsiella quasipneumoniae: AVR78_05440
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Entry
AVR78_05440 CDS
T04389
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
kqu
Klebsiella quasipneumoniae
Pathway
kqu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kqu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AVR78_05440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kqu03019
]
AVR78_05440
03400 DNA repair and recombination proteins [BR:
kqu03400
]
AVR78_05440
Enzymes [BR:
kqu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AVR78_05440
Messenger RNA biogenesis [BR:
kqu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AVR78_05440
DNA repair and recombination proteins [BR:
kqu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AVR78_05440
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AMR13837
LinkDB
All DBs
Position
3977150..3978976
Genome browser
AA seq
608 aa
AA seq
DB search
MAQAEVLNQESLAKQVLQETFGYQQFRPGQETIIETVLEGRDCLVVMPTGGGKSLCYQVP
ALVMGGLTVVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQQDVMAGCRSGQVRLLY
IAPERLMLDNFLEHLANWNLAMLAVDEAHCISQWGHDFRPEYAALGQLRQRMPQIPFMAL
TATADDTTRRDIVRLLGLNDPLIQVSSFDRPNIRYMLMEKFKPLDQLMRYVQDQRGKSGI
IYCNSRSKVEDTAARLQSRGISAAAYHAGLENDVRADVQEKFQRDDLQIVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPAGPL
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNCDICLDPPKQYDGLMDARKAL
STIYRVNQRFGMGYVVEVLRGANNQRIREMGHDKLPVYGIGREQSHEHWVSVIRQLIHLG
LVTQNIAQHSALQLTEAARPVLRGDVPLQLAVPRIVALKPKAMQKSFGGNYDRKLFAKLR
KLRKAIADEENIPPYVVFNDATLIEMAEQSPLTAGEMLSVNGVGTRKLERFGKPFMALIR
SHVDGDDE
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
gtggcacaggcggaagtattaaatcaggaatcgctggctaagcaggttttacaagagacc
ttcggctaccagcagttccgccctggccaggagacgattatcgagacggtgctcgagggc
cgtgactgcctggtggtcatgccgaccggtggcggcaagtcactgtgttatcaggtaccg
gcgctggtcatgggcggcctgacggtagtggtctcgccgctgatctcgctgatgaaagat
caggtcgatcagctgctggccaacggcgtggcggcggcctgtctgaactcgacccagagc
cgcgaacagcagcaggacgtgatggccggctgccgcagcgggcaggttcgtctgctgtat
atcgctccggaacggttgatgctcgacaacttccttgagcatctggcgaactggaatctg
gcgatgctggcggtggacgaagcgcactgcatctcccagtggggccatgacttccgcccg
gaatatgccgcgctgggccagcttcgtcagcggatgccgcagatcccgtttatggcgttg
accgccaccgccgatgacaccacccgccgcgatatcgtccgtctgctgggacttaacgat
ccgctcatacaggtcagcagcttcgaccggccgaacatccgctatatgctgatggagaaa
ttcaagccgctcgaccagctgatgcgctacgtccaggatcagcgcggcaaatcgggcatt
atctactgcaacagccgttcgaaagtggaagataccgccgcgcgtctgcagagccgcggc
atcagcgcggcggcttaccatgccggcctggaaaacgacgtgcgcgccgacgtgcaggag
aaattccagcgcgacgatctgcagattgtggtggcgacagtggcctttgggatgggcatc
aacaagccgaacgtccgctttgtggtgcattttgatatcccgcgcaatattgaatcctac
tatcaggagaccggccgcgccgggcgtgacggcctgccggcggaagcgatgctgttttac
gatccggcggacatggcgtggctgcgccgctgtctggaagagaagcccgccgggccgctg
caggatatcgaacggcataagctgaacgcgatgggggcgtttgctgaagcccagacctgt
cgtcgtctggtgctgctgaactactttggcgaaggacgccaggagccgtgcggcaactgc
gatatctgtcttgatccgccgaagcagtacgatggcttaatggacgcccgtaaggcgctc
tccactatttatcgggtcaaccagcgcttcgggatgggttacgtggtggaagtcctgcgt
ggcgctaacaatcagcgcatccgtgagatgggccacgataagctcccggtatacggcatc
ggccgggaacagagtcacgagcactgggtgagcgtgatccgccaactgattcaccttggg
ctggtgacgcagaatatcgcccagcactccgcgctgcagctgaccgaagccgcacgcccg
gtgctgcgcggcgacgtcccgctgcagcttgccgtaccgcgtatcgtggcgctgaagccg
aaggcgatgcagaaatccttcggcggtaattacgatcgtaagctgtttgccaagctgcgc
aaattacgtaaagcgattgccgatgaagaaaacattcccccgtacgtggtcttcaacgac
gcgacgcttattgagatggcggagcagtcgccgctaaccgccggcgaaatgctcagcgtc
aacggcgtggggacacgtaaactcgagcgtttcggcaagccgtttatggcgctgatccgg
tcgcatgtcgatggcgacgacgagtag
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