Klebsiella quasipneumoniae: AVR78_14460
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Entry
AVR78_14460 CDS
T04389
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
kqu
Klebsiella quasipneumoniae
Pathway
kqu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kqu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AVR78_14460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kqu03019
]
AVR78_14460
03009 Ribosome biogenesis [BR:
kqu03009
]
AVR78_14460
Enzymes [BR:
kqu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AVR78_14460
Messenger RNA biogenesis [BR:
kqu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AVR78_14460
Ribosome biogenesis [BR:
kqu03009
]
Prokaryotic type
rRNA processing factors
AVR78_14460
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AMR15470
LinkDB
All DBs
Position
complement(550223..553456)
Genome browser
AA seq
1077 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKRAAVSAIESRQGDVRVIIVPNDEMQ
TPHYSVLRVRKGEETSTLSYLLPKLHEEEMALPGDDEPAERKRPEQPALAAFVMPDAPPA
PMLEEPVAAPVAAAAPVAATAPAQPGLLSRFFSALKNIFSGAEEAKPAEVKVEKKAEEKP
ERQQERRKPRANNRRDRNDRRENRDNRDNRDNRDNRDTRADNAEGREPRESREENRRNRR
EKPSQNVEARDVRQTSGDDAEKAKSRDEQQPRRERTRRRNDDKRQAQQEAKAQTREEPLA
QETEQEERVQTLPRRKPRQLAQKVRVESAVVEQVAEIVPEAVVAEVIAPRSEPVKAELPA
VVESVADQDENGESREANGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACAS
PEMASGKVWIRYPVVRPQDQQSEEVQVQNDNLVETVAAVATPVAVVETVTAAPVTVEPAT
MEPVTAEPVVVEPVVAAEPVVVDAAEGIAPAAVEPAPQELVTEAPAVEAPQAIAPATLDA
EPVVVEPEVVETAPVVEAPVETIAPAAETAVEAPVVEAAPVEPVKVEPPVSKPVVVAGHR
HATAPMTRAPAPDYVPEAPRHSTWVRPPFAFEGKGAAGGHSATHKATAEPTRPQPVE
NT seq
3234 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaggaagagttgcgcgtcgcccttgttgat
gggcagcgcctgtacgacctggatatcgaaagccccgggcacgaacagaaaaaagcgaac
atctacaaaggcaaaatcacccgcattgaacccagccttgaagccgcgtttgttgattac
ggcgccgagcgtcatggtttcctccccctcaaagaaatcgcccgcgaatacttccccgcc
aactacaatgcgcacggccgtcctaatatcaaagacgtactgcgtgaaggtcaggaagtt
atcgtgcagattgataaagaagaacgcggcaacaaaggcgctgcgctcaccacctttatc
agcctggcgggcagctatctggtattgatgccgaacaacccgcgcgcggggggaatttca
cgccgtatcgagggcgatgaccgtaccgaactgaaagaagcgctggcgagcctggagctt
ccggacggcatgggccttatcgttcgcaccgctggcgtcggcaaatctgccgaagccttg
cagtgggacctgagcttccgtctgaaacactgggaagcgattcagaaagccgcggaaagc
cgtccggcgccgttccttatccaccaggaaagcaacgtcattgtccgcgccttccgtgac
tatctgcgccaggatatcggcgaaatcctgatcgataatccgaaagtgctcgagctggcg
cgccagcatatcgccgcgctgggtcgtccggatttcagcagcaaaatcaaactgtacacc
ggtgaaatcccgctgttcagccactaccagatcgaatcccagattgaatccgccttccag
cgtgaagtacgtctgccgtccggtggctctatcgtcatcgacagcactgaagcgctgacc
gcgatcgatatcaactcggcccgcgccacccgcggcggcgatatcgaagagacggcgttc
aacaccaacctcgaagcggctgacgagattgcccgccagctgcgtctgcgcgacctcggc
ggcctgatcgttatcgactttatcgatatgaccccggttcgccaccagcgtgctgtggag
aaccgtctgcgcgaagccgtccgtcaggaccgggcgcgcattcagatcagccatatctcg
cgcttcggcctgctggagatgtcccgccagcgcctgagcccgtcgctgggcgaatccagc
caccacgtctgcccgcgctgctccggcaccggcaccgtgcgtgataacgaatcgctgtcg
ctctctattctgcgtctgattgaagaagaagcgctgaaagagaacaccaaagaagtgcac
gccatcgttccggtaccgatcgcctcctatctgctgaacgaaaaacgtgccgcggtgagc
gctatcgaatcccgacagggcgatgtgcgcgttattatcgtgccaaacgacgaaatgcag
acgccgcactactccgtcctgcgcgtgcgcaaaggtgaagagacctcaacgctgagctac
ctgctgccgaagctgcatgaagaagagatggcgctgccgggcgacgatgagccggcagaa
cggaaacgtccggaacagccggccctggccgcttttgtcatgcctgacgcgccgccagcc
ccgatgcttgaagagcctgtcgccgctcctgtcgccgcagcggcaccggtcgcggccacc
gcaccggcgcagcctggcctgctctcacgcttcttcagcgcgctgaagaatatcttctct
ggcgccgaagaggccaaaccggctgaggttaaggtcgagaagaaagcggaagaaaaaccg
gagcgtcagcaggagcgccgtaaaccgcgcgccaacaaccgccgcgatcgcaacgaccgc
cgtgaaaaccgcgacaatcgtgacaaccgcgataaccgtgacaatcgtgacactcgtgcg
gacaatgccgagggccgtgaaccgcgcgaatcgcgtgaagagaaccgtcgcaaccgtcgt
gagaagccgtcgcagaatgtggaagcccgtgatgttcgccagacctcaggcgacgacgcg
gagaaagcgaaatcccgtgacgagcagcagccgcgccgcgaacgcacccgccgccgcaat
gacgacaaacgtcaggcgcagcaggaagccaaagcgcagactcgcgaagagccgctagcg
caggagacggagcaggaagagcgtgtgcagaccctgccgcgtcgtaaaccgcgccagctg
gcacagaaagtacgcgttgagtccgctgtcgttgagcaggttgccgagatcgtgccagaa
gccgtagtggcggaagttatcgctccgcgcagcgagccggtgaaagccgagctgccagca
gtagtggagagcgtggcggaccaggacgaaaatggcgaatcccgtgaagcgaacggtatg
ccgcgtcgctcacgtcgttccccgcgtcacctgcgcgtcagcggtcagcgtcgtcgtcgc
tatcgtgacgaacgctatccgacccagtcgccaatgccgctgaccgtggcctgcgcatcg
ccggagatggcttccggtaaagtctggatccgctacccggtggttcgtccgcaggatcag
cagtcggaagaggttcaggttcagaacgacaacctcgtggaaaccgtcgcggccgtcgcg
accccggttgccgtcgttgaaaccgttaccgctgccccggtcaccgtcgagccggctacc
atggagccggttaccgccgagcctgtggtcgtcgagccggtcgtagccgccgagccggtg
gtggttgatgctgcggaaggtatcgcgccagcagccgtcgagccagcgccgcaggagctg
gtcaccgaagcgccggctgtcgaagcgcctcaggctatcgcgccagcgacgctcgacgcc
gagccggtggtggtagaacctgaagtggtggaaacggcgcctgtcgttgaagcgccagtg
gaaaccatcgcgccggcggcggaaaccgcagttgaagcaccggttgtcgaagccgcgcct
gtcgagccggtcaaagtcgagcctccggtgagcaagccggtagtggtggcgggtcatcgc
catgccaccgcgccaatgacccgtgcgccagcgccggactatgtcccggaagcgccgcgc
cacagcacctgggtgcgcccgccattcgcttttgaaggcaaaggcgccgccggcggtcat
agcgccacccataaagccaccgctgaaccgacccgcccacagcccgtcgagtaa
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