Klebsiella quasivariicola: B8P98_02380
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Entry
B8P98_02380 CDS
T05116
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
kqv
Klebsiella quasivariicola
Brite
KEGG Orthology (KO) [BR:
kqv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kqv03019
]
B8P98_02380
Messenger RNA biogenesis [BR:
kqv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
B8P98_02380
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAPES4
GDPD
Motif
Other DBs
NCBI-ProteinID:
ASV18219
LinkDB
All DBs
Position
471311..473251
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AA seq
646 aa
AA seq
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MRLTTKFSAFITLLTSLTIFVTLIGASLSFYNGIENKVANRVQGVATMLDNRLITTSFDQ
LEPQLDELLTPFEIVHIDFMLNGKPLYSHSRTDSYRPLGSHEQFREVTVPSLKHPGITLH
LVYVDPMVNYFRSLSVTAPLSISIGFMVVIIFFAVRWIRRQLAGQELLELRSTRILSGER
GPQVRGSVYEWPASTSSALDMLLSELQFASDQRSRMDTLIRSYAAQDSKTGLNNRLFFDN
QLATLLEDQEKVGAYGIVMMIRLPEFDLLRDNWGRTAAEEHYFTLINLLSTFIMRYPGAL
LARYHRSDFAVLLPHRTLKEADSIAGLLLKAMDALPPTRILDRDDMMHIGICAFRSGQST
AQVMEHAEAATRNAVLQGSNSWSVYDDTLPEKGRGNVRWRTLIEQMLSRGGPRLYQKPAV
TRDGRVHHRELMSRMYDGKEEVIAAEYMPMVLQFGLAEEYDRLQVTRLLPFLGFWPEENL
ALQLSVESLIRPRFQRWLRDALMQCEKSQRQRIIFELAEADVCQYIGRLQPVMRLVNALG
VRVAVVQAGLTLVGTSWIKQLDAEVIKLHPGLARNIEKRSENQLLVQSLVEACKGMPMQV
FATGVRSRSEWLVLSQCGVTGGQGEFFAASQPLDTNVKKYSQRYSV
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgcgattaacgacgaagttctcagcctttatcacgctgctaactagcctgaccatcttc
gtcacgctgattggtgcttcgctgagcttttataacggcattgagaataaggttgcaaac
cgcgtgcagggggtggcaacgatgctggataaccggctcatcactacctcgtttgaccag
cttgagccgcaactggacgaactgttgacaccgttcgagatcgtgcatatcgatttcatg
ctgaacggcaaaccgctctacagtcactcccgaaccgacagctatcgcccgctgggaagc
catgaacaattccgtgaggtgacggtcccgtcgcttaaacatccgggtatcactctgcat
ctggtctacgttgacccgatggttaactatttccgttcgctgtcggtcacggccccgctg
tcgatctctatcggctttatggtggtgattatcttcttcgccgtccgctggatccgccgc
cagctggccggccaggagctgcttgagcttcgttccacgcgcatcctgagcggcgagcgc
gggccgcaggtgcgcgggtcggtctatgaatggccggccagtaccagtagcgcgctggat
atgctgctgtcggagctgcagtttgccagcgatcagcgcagccgaatggatacgctgatt
cgctcctatgcggcacaggattccaaaaccggcctgaataaccgcctgttttttgacaat
cagctggccaccctactggaagatcaggaaaaagtgggcgcctacggcatcgtgatgatg
atccgtctgccggagttcgatctgctgcgggacaactggggacgcacggcagccgaagag
cattactttacgcttatcaacctgctctctacctttattatgcgttaccccggcgcactt
ctggcgcgctatcaccgtagcgactttgccgtgctgctgccgcaccgtacgttaaaagag
gcggatagcatcgccggactgttgctgaaggcgatggacgcgttgccaccgacgcgcatt
ctcgatcgtgacgatatgatgcatatcggcatctgtgctttccgcagtgggcaatcgact
gcgcaggtcatggaacatgccgaagcggcgacgcgcaacgcggtgctgcagggcagcaac
agctggtcggtttatgacgacacccttcctgagaaaggccgcggcaacgttcgctggcgg
acactgatcgaacagatgctcagtcgcggcgggccgcggttatatcaaaaaccggccgtc
acccgcgacggacgcgtgcatcaccgtgagctgatgtcacggatgtacgacggtaaagaa
gaggtgattgccgcggaatacatgccgatggtgctgcagtttggcctggcagaggagtat
gaccgcctgcaggtgacgcgcctgctgccatttttaggcttctggcccgaagagaacctg
gccctgcagctgtcggtagagtcgctaatccgcccgcgtttccagcgctggctgcgcgat
gccctgatgcaatgtgaaaaatctcagcgtcagcggattatttttgaacttgcagaggca
gatgtttgtcaatatatcggccgcctgcagcccgttatgcggttggttaatgccctcggt
gttcgggtggcagtggttcaggcgggattaaccctggtgggtactagctggatcaaacag
ctggatgcggaagtgatcaagctgcatccagggctggcgcgcaacatcgaaaagcgcagc
gagaaccagctgctggtacaaagcctggtggaagcctgtaaaggcatgcctatgcaagtt
tttgcgacgggcgtacgcagccgtagcgagtggctggtactgtctcaatgcggtgtcacg
ggcgggcagggggaattttttgccgcctcacagccacttgacacaaatgtgaaaaaatat
tcgcaaagatactcggtttga
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