Klebsiella quasivariicola: B8P98_17675
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Entry
B8P98_17675 CDS
T05116
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kqv
Klebsiella quasivariicola
Pathway
kqv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kqv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B8P98_17675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kqv03400
]
B8P98_17675
Enzymes [BR:
kqv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B8P98_17675
DNA repair and recombination proteins [BR:
kqv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
B8P98_17675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ASV20990
LinkDB
All DBs
Position
3506222..3509668
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEQYRYSLPVKAGDQRQLGELTGAACATLVAEMAERHNGPVVLVAPDMQNALRLNDEIR
QFTDSMVMGLADWETLPYDSFSPHQDIISSRLATLYQLPTMQRGVLIVPVSTLMQRVCPH
SFLHGHALVMKKGQRLSRDALRAQLEGAGYRHVDQVMEHGEYATRGALLDLFPMGSDQPY
RLDFFDDEIDSLRLFDVDSQRTLEEVAAINLLPAHEFPTDQTAIELFRSQWRDRFEVKRD
AEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPASTLIVNTGDLEASAERFQNEAR
ARFENRGVDPMRPLLPPELLWLRSDELFSELKKWPRVQLKTERLADKAANTNLGYQTLPD
LAVQAQNKAPLDNLRRFLEAFTGPVIFSVESEGRREALSEMLARIKVAPKHVRRLEEATG
SGRYLMIGAAEHGFIDSQRDLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIG
QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA
PLHKLGGDAWTRARQKAAEKVRDVAAELLDIYAQRAAKAGFAFKHDREQYQLFCDGFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL
LAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQAQILEQAAEGKIDILIGTHKLLQSEVKL
RDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDALVVREAILRETLRGGQVYYLFNDVENIQKAADKLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGQMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
NTRLSFYKRIASAKNEQDLEEIKVELIDRFGRLPDAARNLLDIARLRQQAQKLGIRKLES
NEKGGVIEFNEKNNVNPVWLIGLLQKQPQHFRLDGPTRLKFMQDLEERKTRMDWVRQFMR
QLEENAVA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacaatatcgatactcattgccggtcaaagccggcgatcagcgccagcttggc
gagttgaccggcgcagcctgcgccaccctggtggcggagatggccgaacgccacaacggc
ccggtggtgctggtggcgcctgacatgcaaaacgcgctgcgtctgaacgacgaaatcagg
cagtttaccgacagcatggtgatggggctggcggactgggaaacgctcccttacgacagc
ttctcgccgcatcaggacatcatctcctcccgtcttgccaccctttaccagttacccact
atgcagcgcggcgtgctgatcgtcccggtcagcaccctgatgcagcgcgtctgtccgcac
agtttccttcacggccacgcgctggtgatgaaaaagggccagcgcctgtcgcgcgatgcg
ctgcgcgctcagctggagggcgccggctaccgccatgtcgatcaggtgatggagcacggc
gaatatgccactcgcggcgcgctgctcgacctgttcccgatgggcagcgatcagccctac
cgcctcgatttctttgacgatgaaatcgacagcctgcgcctgttcgacgtcgacagccag
cgtacgctggaggaagtggcggccattaacctgctgccggcacacgaatttcccaccgac
cagaccgccatcgagctgttccgcagccagtggcgcgatcgctttgaggtgaagcgcgat
gccgaacatatctatcagcaggtcagtaaaggaacgctacctgccggtatcgaatactgg
cagccgctgttcttcagcgagccgctgccgccgttatttagctatttcccggccagcacg
ctgatcgtcaacactggcgatctggaagccagcgcggagcgattccagaatgaagcccgg
gcccgttttgaaaaccgcggcgtcgacccgatgcgcccgctcctgccgcctgagctgctg
tggctacgcagcgatgagctgttcagcgaactgaaaaaatggccgcgcgtgcagctgaaa
accgagcgtctggcggacaaagcggcgaataccaatctgggctaccagacgctgccggac
ctcgcggtgcaggcacaaaacaaagcgccgctggataatctgcgtcgcttcctcgaagcg
tttaccggcccggtgatcttctcggtggaaagcgagggtcgccgtgaagcgctgagcgaa
atgctggcgcggatcaaagttgcgccaaaacacgtgcggcggctggaggaagccaccggc
agcggccgctatctgatgattggcgccgccgagcacgggtttatcgacagccagcgcgat
ctggcgctgatttgcgagagcgacctgctcggcgagcgggtggcgcgccgtcgtcaggat
tcccgtcgcaccatcaaccctgacaccctgattcgcaacctcgccgaactgcatatcggc
caacccgtggttcaccttgagcacggcgtgggccgttacgcggggatgaccactctggaa
gcgggcggcatcaccggcgaatacctgatgttgacctacgccaacgatgccaaattgtac
gttccggtatcgtccctgcatcttatcagccgctacgccggcggagcggaagagaacgcg
ccgctgcacaagctgggcggcgatgcctggacccgggcgcgacaaaaagcggctgagaaa
gtacgcgacgtggcggccgagctgctggatatctacgcccagcgcgcggcgaaagccggc
tttgcctttaagcatgaccgcgaacaatatcagctgttctgcgacggcttcccgtttgaa
accacgccggaccaggcgcaggcgattaacgccgtcctcagcgatatgtgccagccgctg
gccatggaccgcctggtgtgcggcgatgtgggcttcggcaagaccgaagtggccatgcgc
gccgccttcctcgccgtggagaaccacaagcaggtggcggtgctggtgccgaccaccctg
ctggctcagcagcactatgacaacttccgcgatcgtttcgccaactggccagtacgcatc
gaaatgctctcccgtttccgcagcgctaaagagcaggcgcagatccttgagcaggctgcg
gaaggcaaaatcgatatcttaatcggcacgcacaagctgttgcagagcgaagtgaagctg
cgcgatctcgggctgctgatcgtcgacgaagagcaccggtttggcgttcgtcacaaagag
cgcatcaaagcgatgcgcgccgatgtcgatatcctgaccctcaccgccacaccgatcccg
cgaacgctgaacatggcgatgagcgggatgcgcgatctgtcgatcatcgccacgccgccg
gcgcgccgcctggcggtgaagacctttgttcgcgaatacgacgccctggtggtgcgcgag
gcgatcctgcgcgaaacgctacgcggaggccaggtctactatctgtttaatgacgttgag
aacatccagaaagccgccgacaagctggcggagctggtgcctgaggcgcggatcgccatc
ggtcatggtcagatgcgggagcgcgaactggagcgggtgatgaatgacttccatcaccag
cgcttcaatgtgctggtgtgcaccactatcatcgaaaccgggatcgacattcccaccgcc
aacaccatcatcattgaacgcgccgaccattttggcctcgcccagctgcaccagctgcgc
ggccgcgttggccgttcgcatcaccaggcctatgcctggttgctgacgccgcatccgaaa
gcgatgactaccgatgcgcagaagcgccttgaagccattgcctctctggaagatctcggc
gccggctttgcgctggcgacccacgatctggagattcgcggcgccggtgaactgcttggc
gaagatcagagcggtcagatggaaaccatcggtttctctctgtatatggagctgctggaa
aacgcggtagatgcgctgaaagccggtcgcgagccgtcgctggaggatctcaccagccag
cagacggaggttgaactgcgcatgccttccctgctgcctgacgatttcatccccgacgtc
aatacgcgactgtcattctataagcgcattgccagcgccaaaaacgaacaggatctggag
gagatcaaagtcgagctgatcgaccgttttggccgcttgcccgatgccgcccgcaatctg
ctggatatcgcccgtctgcgtcagcaggcgcagaagctggggatccgtaagctggaaagc
aacgaaaaaggcggtgtgatcgaatttaacgagaaaaacaacgtcaatccggtgtggttg
atcggcctgctgcagaagcagccgcagcacttccggcttgacgggccgacgcgcctgaaa
ttcatgcaggatctggaagaacgtaagacgcggatggactgggttcgtcagtttatgcgt
cagctggaagagaacgccgtcgcctga
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