Kosakonia radicincitans: A3780_00110
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Entry
A3780_00110 CDS
T04579
Name
(GenBank) type IV secretion protein Rhs
Organism
krd
Kosakonia radicincitans
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Gene cluster
GFIT
Motif
Pfam:
RHS_repeat
DUF6531
RHS
DUF4595
Motif
Other DBs
NCBI-ProteinID:
APG16042
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Position
22793..26854
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AA seq
1353 aa
AA seq
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MHSGAHFDPQLGLDIHTYPWPLPTPHIGIVFDVFDYLPLIGTTVHVNSIKRASAGTGGMA
VHIPVGGAWIPPLRAPGGPQIEDELFMGSKTVSVDGEPFSRIGMPVLSCNIIGLIPPFRL
KRATKPKPLSLTLPLTFNLALPNNVIVGGPPTINLMALLMRAGLSGLGKGFKKLKKTPQW
RLFMRRFRKLRQKLFRNMDPGFLKCRVLRAEPVDIRDGSVSLEQMDFLLPGRLPLEWTRS
YTSSDTEIAGMCGYGWSTPADTRLEVLADEGVALLTQAEGMTLFAVLPQADGREQAITGL
PDGSRLWRETRDGEVWWRIEQESGPELHFSGKQGVLPLRRLADRNGNGWAFDWNGDELQS
IREFSHAGATGREILVTWQNDRLLALRLHNTLDGEITPLTRYEYDADNQLSAEIDALSHP
RHFFWQQRYLISHVDRNGQGFHYQYDDAWRVIHAWGDGGVWDYRFAWHELLNEVEISDSA
GNISRITFDENGLPIAEIDPTGGNTLFRYDDFGRTAELVEPDGSTWRWEYDERGQMVAEH
LPDGSVVQASYDDWGDLIAVTDEQGANWRTQFDSCGNLVAEIDPTGVTSRYHYDAFGQLT
AAEIPGSPPTHYHYDRFGFLSAEHVAGGGVTRFRYSVRGTLQERIDADGGVTRFHWDMKD
RLVATVDPAGGEVRVSYDREDEPLQFTDEQGRITRFRYTGTGMLASCETPDGATLGYQYD
AEDRLLAVINQNGQRWQFTRDALGRVTAESDYWGQITRYGWDKASRLIHREDPLGREVRY
GYDRAGRLCERRSGDTLQATFHYDPCGRMVLCENPWRRLVWRYDRAGRLLCEEQDGFQLR
YGYDQRGLLISRESDGGHRVRYGMDEHDRLSEVQLNDDAPIRFTYDACGRRASEQLSDDV
ERCYRYDRLGRLTSQQVLQNDLPLFASGFAYDRTGNLTLREDSQWGSDRYAYDPVGRLAA
HTAPDGVLRQFIHDAAGNALQTQIRDVNDSAGGWFREGLHQGTRYVFDRAGELRQRRSVQ
HEGEKEDFSWDENRQLIAVRKGNEQVRYGYDGLGRRVFKQTASETRWFYWQEDALAGETV
TATPQPLAALSIFDTGGRLKRQKAQAQLFSNLREYIYYPGGFRPLALLTQENGQKQSWHY
HCDPNGAPVRLTSPGGEVVWSERSGAWGEKGEVYASRIDNPLRFQGHYFDGETGLHYNRY
RYYDPAIAAYISQDPLGLAGGLNVYDYVIAPQTWIDPLGLKCWNTARRDYWKAEAKAAPK
GMYSSVNMLRMRLGLAPRIRVEEYHFKTRRIRTRNVSLELNHRIWPQRSGKNVDLPYNLE
KVTPWEHAAKDPYRHTGSRLIKIVQDVGNYTGR
NT seq
4062 nt
NT seq
+upstream
nt +downstream
nt
atgcactccggcgcgcacttcgatccacagctcgggctggatattcatacctacccgtgg
ccgctgccaacgccgcacatcggcatcgtttttgatgtcttcgactatctgccgctgatt
ggcaccacggttcacgttaacagcatcaaacgcgccagtgccggaacgggcgggatggcg
gtgcatattccggtgggcggcgcgtggatcccgccgctgcgcgcgccgggcggcccgcag
attgaagatgagctgtttatgggcagcaaaaccgtttcggtggatggcgagccgttttcc
cgcattggcatgccggtgctgagctgcaacattattggcctgatcccgccgtttcgcctc
aaacgcgctaccaaaccgaaaccgctttcgctgacgctgccgctaacgtttaacctcgcg
ctgcccaacaatgtgattgtcggcgggccgcccaccatcaacctgatggcgctgctgatg
cgcgccgggttaagcggcctgggaaaagggtttaaaaaactgaaaaaaacgccgcagtgg
cggctgtttatgcgccgtttccgcaagctgcggcaaaaactgtttcgcaatatggacccc
ggcttcctgaaatgccgggtgctgcgcgcggagccggtggatatccgcgacggcagtgtc
agcctggagcaaatggattttctgctgccgggcaggttgccgctggagtggacgcgcagc
tatacctcgtccgacacggaaatcgcagggatgtgtggttacggctggtccaccccggcg
gatacccgccttgaggtgctcgccgatgaaggcgttgccctgctgacgcaggcggaaggg
atgacgctgtttgccgtgctgccgcaggcggatggccgcgaacaggcgattaccggcctg
ccggacgggagccgcctgtggcgcgaaacgcgcgatggtgaagtgtggtggcgaatcgag
caggagagcggcccggagctgcatttcagcggtaaacagggcgtgttgccgctacgcagg
ctggcggatcgtaacggtaatggctgggcgtttgactggaacggcgatgaattgcagtcc
attcgcgagttcagccacgcgggagcgaccgggcgtgaaatcctcgtcacttggcaaaac
gatcggctactggcgctgcgtttgcacaatacgctggatggcgagataactccgcttacg
cgctatgaatatgatgcggataaccagcttagcgccgaaattgatgcgctgtcgcacccg
cgccacttcttctggcagcagcgctatctgataagccatgtggatcgcaacggccagggg
ttccattaccagtacgatgatgcctggcgggtgattcatgcctggggcgatggcggtgtt
tgggattatcgctttgcctggcacgaactgcttaatgaagtggaaataagcgattcggcg
ggcaatatctcgcgcattacctttgatgaaaacggtttgccgatcgcggaaatcgatccc
accggcggcaatacgctgtttcgctatgacgattttggccgcacggcggagttggtggag
ccggatggcagcacctggcgctgggagtatgacgagcgcgggcagatggttgccgaacac
ctgcctgatggcagcgtcgtacaggcgagctatgacgactggggcgatctgattgcggta
acggatgagcagggagctaactggcgcacgcagttcgatagctgcggtaatctggtggca
gaaattgacccaacgggcgtcacatcgcgttatcactatgatgcgttcggccaactgacc
gccgccgagattcctggctctccgccaacccattatcactatgaccgatttggtttttta
agcgctgagcacgttgctggcggcggcgtgactcgctttcgctactcggtgcgcggtacg
ttgcaggagcgcattgatgccgatggcggtgtcacccgtttccactgggatatgaaagac
cggctggtcgctacggttgatccggcgggaggcgaagtgcgcgtcagctatgaccgggaa
gacgagccgctgcaatttaccgacgagcaggggcgcataacgcggtttcgctataccggc
accggaatgcttgcttcctgcgaaacgccggacggcgcaacgctgggctatcagtacgac
gctgaagatcgcctgctggcggtgatcaaccagaacgggcagcgctggcagttcacccgc
gatgcgctgggccgggtcacggcggagagcgattactgggggcagataacgcgctatggc
tgggataaagccagccgcttgattcaccgcgaagatccgctcgggcgtgaagttcgttac
ggctacgaccgtgccgggaggctttgcgagcggcgcagcggcgacacgttacaggcgacg
tttcattacgatccctgcgggcgcatggtgctgtgcgaaaacccgtggcggcggttggtc
tggcgttatgaccgcgccgggcgattactgtgcgaggagcaggacggcttccagttgcgt
tacggctatgaccaacgcgggctgctgatctcgcgcgagagcgacggcggccaccgggta
cgttatggcatggatgagcatgacaggctgagcgaggtgcaactgaacgacgatgcgcca
atacgtttcacttacgatgcttgtgggcgcagagccagcgagcagctctctgacgacgtt
gagcgctgttatcgctacgatcgccttggccgcttaacgtcgcagcaggtgctgcaaaac
gatttaccgctgttcgccagcggttttgcttacgatcgcacaggcaacctgacgctgcgt
gaagacagccagtggggcagcgatcggtatgcctacgatccagtaggacgtctggcggcg
cataccgcaccggacggtgtgctgcgccagtttatccatgacgcagcgggtaacgcgttg
cagacgcagatccgcgatgtgaacgacagcgcaggcggctggttccgcgaaggcctccac
caggggacgcgctatgtgtttgaccgcgctggcgaactgcgccagcgccgtagtgtgcag
catgagggcgaaaaagaggacttcagctgggatgaaaaccgccagttgatcgccgtacgt
aagggtaacgagcaggtgcgttatggttatgacggcctgggacggcgtgttttcaaacaa
accgccagtgaaacgcgctggttctactggcaggaggatgcgctggcgggcgagacagtc
accgccaccccgcagccgctggcggcgctgagcatcttcgataccggcgggcgactgaag
cggcaaaaagcgcaggcgcaactgttcagcaacctgcgcgagtacatctactaccctggc
ggtttccggccgctggcgctattaacgcaggaaaacgggcagaagcagagctggcactat
cactgcgatccgaacggtgcgccggtgcgcctgacctcgcccggcggggaggttgtctgg
tcggaaagaagcggcgcatggggcgaaaaaggcgaggtttatgccagccgcatcgataac
ccgctgcgtttccaggggcactattttgatggcgaaaccggtctgcattacaaccgctat
cgctattacgatccggcgattgctgcctatattagccaggatccgcttgggcttgccgga
ggactcaatgtctatgactatgtgattgccccgcagacgtggatcgatcctctcggctta
aaatgctggaataccgcgcggcgcgattactggaaagctgaagccaaagccgcgccgaaa
ggcatgtactcttcagtgaatatgttgcgtatgcgattggggttagcgccgcgcattcgg
gtggaggagtaccactttaagacccggcgtatcagaacacggaatgtgtcgctggaactg
aaccaccgcatctggccgcagcggtcgggcaaaaacgtcgatcttccctataacctggag
aaggtgacgccctgggagcatgccgcgaaggatccttacaggcatactggctcccgattg
attaaaattgttcaggatgttggcaactatacgggacgctaa
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