Kosakonia radicincitans: A3780_03140
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Entry
A3780_03140 CDS
T04579
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
krd
Kosakonia radicincitans
Pathway
krd03030
DNA replication
krd03430
Mismatch repair
krd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
krd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A3780_03140 (dnaE)
03430 Mismatch repair
A3780_03140 (dnaE)
03440 Homologous recombination
A3780_03140 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
krd03032
]
A3780_03140 (dnaE)
03400 DNA repair and recombination proteins [BR:
krd03400
]
A3780_03140 (dnaE)
Enzymes [BR:
krd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
A3780_03140 (dnaE)
DNA replication proteins [BR:
krd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
A3780_03140 (dnaE)
DNA repair and recombination proteins [BR:
krd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
A3780_03140 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
APG16605
LinkDB
All DBs
Position
690317..693799
Genome browser
AA seq
1160 aa
AA seq
DB search
MAEPRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGTAHGA
GMKPIVGADLHVQSDLLGDELTQLTVLAANNTGYQNLTLLISRAYQRGYGALGPWIDRDW
LQELGEGLILLSGGRMGDVGKSLLRGNSVLVEQCLDFYKEHFPDRYYLELIRTGRADEEP
YLHAAVQLAEEHGLPVVATNDVRFIDAGDFDAHEIRVAIHDGFTLDDPKRPRNYSAQQYM
RSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDMTTEDFLVEKSKVGL
EERLAFLFPDEQVRAEKRPPYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLAKAFEAEPQ
LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEAGQHPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEPPLDIAAIPLDDKKSFDML
QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRGTFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG
VGEGPIEAIIEARNNGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLGPHRAALMN
SLGDALKAADQHSKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLEGERETLGLY
LTGHPINQYLKEIERYVGGYRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTLD
DRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY
ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSD
RLLNDLRGLIGSEQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaccacgtttcgtacacctgcgggtgcatagcgactactccatgattgacggg
ctggcgaaaaccgggccgctggtgaaaaaggcggccgcgctcggcatgcccgcgctggcg
atcaccgattttacgaacctctgtggtctggtgaagttctacggaacggcgcacggagcc
gggatgaaaccgatcgtcggcgccgatctgcacgtacagagcgatctgttaggcgatgaa
ctgacacagctcaccgtcctggcggccaacaataccggttaccagaatctgacattgctg
atttcgcgagcctaccagcgtggctatggcgcactggggccgtggatcgatcgcgactgg
ttgcaggagctcggcgaagggttgatcctgctctccggcgggcgcatgggcgacgtgggg
aaaagcctgttgcgtggcaacagtgtgctggttgaacagtgtctcgatttctacaaagag
cattttcccgatcgctactaccttgagttgatccgcacggggcgtgctgatgaagagccc
tacctgcacgcagccgtacaactggcggaagagcacggtttgccggtcgtggcgaccaac
gatgtgcgctttattgatgcaggcgacttcgacgcgcatgagatccgtgtcgccatccac
gacggtttcactctggacgatcccaaacgtccgcgcaactactccgcgcagcaatatatg
cgcagcgaagaggagatgtgcgaactcttctccgatatcccggaagcgctggaaaacacc
gtcgaaatcgccaaacgctgtaatgtgaccgtacggcttggtgaatacttcctgccgcag
ttcccgaccggtgatatgaccactgaagacttcctcgtggagaaatcgaaagtgggtctc
gaagaacgccttgcgttcctcttcccggatgagcaagtgcgtgcagagaaacgtccgccg
tacgacgagcgtcttgatatcgaattgcaagttatcaaccagatgggtttccccggttac
tttctgatcgtgatggaatttatccagtggtcaaaagataacggcgtgccggtagggccg
gggcgtggctcgggcgctggatcgctggtggcttatgcgctgaaaattacggaccttgat
ccgctggaatttgacctgctgttcgaacgtttccttaacccggaacgtgtatcgatgccc
gacttcgacgttgacttctgtatggagaagcgcgaccaggtgatcgagcacgtggcggac
atgtacgggcgcgatgcggtatcgcagatcatcaccttcggaaccatggcggcgaaagcg
gttatccgcgatgtgggtcgcgtactgggtcacccgtacggctttgtggaccgcatctct
aaactggtgccgccggatccgggcatgacgctggcgaaagcgttcgaagccgagccgcaa
ctaccggaaatctacgaagcagacgaagaagttaaagcgctaatcgacatggcgcgcaag
ctggaaggtgtgacgcgaaacgcgggtaaacacgctggtggcgtggtcatcgcacccacc
aaaataaccgactttgccccgctgtactgtgatgaagccggtcagcacccggtcactcag
tttgataaaaacgatgttgaatatgccgggctggtgaagtttgacttcctgggtttgcgc
acgctgactatcatcaactgggcgctggagatgatcaacgcccggcgcgagaagaacggc
gagccgccgctcgatatcgccgctattccgctggatgacaagaaaagtttcgacatgctg
caacgctcggagaccactgcggtgttccagcttgaatcccgcggcatgaaagatttaatt
aagcgcctgcaacccgactgcttcgaagatatgatcgcgctggtggccctgttccgtccg
gggccgttgcagtcaggcatggtagataacttcatcgaccgtaaacacgggcgcgaagag
atctcctatcccgatgtgcagtggcagcatgaaagcctgaaaccggtactggagccgact
tacggcattatcctctaccaggaacaggtgatgcagattgctcaggtgctttcgggttat
acccttggcggcgcggacatgctgcgccgtgcgatgggtaagaaaaagccggaagagatg
gccaagcagcgcggcaccttcgaagagggcgcgaagaaaaatggcatcgacggcgaactg
gcgatgaaaatctttgacctggtagaaaaattcgccgggtacggatttaacaaatcgcac
tctgccgcctatgctttggtctcataccagacgctgtggttgaaagcgcactatccggcc
gagtttatggcggcggtgatgactgccgatatggacaacaccgaaaaagtcgttggtctg
gtggatgagtgctggcgcatggggctgaaaatcctgccgccggatattaactccgggttg
taccatttccacgtcaacgatgacggtgaaattgtttatggtatcggggcgattaaaggc
gtcggtgaaggtccgattgaggcgatcatcgaagcgcgtaataacggcggttacttccgc
gaactgtttgatctgtgcgcgcgcaccgacattaaaaagcttaatcgccgggtgctggaa
aaactgattatgtccggggcgtttgaccgccttgggccgcatcgtgcagcgctgatgaac
tcgctgggtgatgcgcttaaagccgccgatcagcattcgaaagccgaggcgattggccag
gccgatatgttcggcgtgctggccgaagagccagagcagatagaacaatcttacgccagt
tgccagccgtggccggaacaggtggtgctggaaggtgagcgtgaaacgttaggtctctac
cttacgggtcacccgattaaccaatatttgaaagaaattgagcgctatgtcggaggctat
cggctgaaagacatgcatccgaccgaacgtgggaaggtcaccacggcggcggggctcgtc
attgctgcgcgggttatggtcaccaagcgcggcaatcgtatcggcatctgtacgttagat
gaccgttccgggcgtctggaagtgatgttattcactgatgccctggataaataccagcaa
ctgctggaaaaagaccgcatacttattgtcagcggacaggtcagctttgatgactttagc
gggggacttaaaatgaccgcccgtgaagttatggacattgacgaagcccgggaaaaatac
gcccgtgggcttgctatctcgctgacggacaggcaaattgatgaccagcttttaaaccga
ctccgtcagtctctggaaccccaccgttcgggaaccattccagtacatctctactatcag
agggcggatgcgcgtgcgcggttacgtttcggcgcaacgtggcgcgtctctccgagcgat
cgtttactcaacgatctgcgtggcctcataggttcggagcaggtggaactggagtttgac
taa
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