Kosakonia radicincitans: A3780_08750
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Entry
A3780_08750 CDS
T04579
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
krd
Kosakonia radicincitans
Pathway
krd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
krd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A3780_08750 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
krd03019
]
A3780_08750 (rne)
03009 Ribosome biogenesis [BR:
krd03009
]
A3780_08750 (rne)
Enzymes [BR:
krd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
A3780_08750 (rne)
Messenger RNA biogenesis [BR:
krd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A3780_08750 (rne)
Ribosome biogenesis [BR:
krd03009
]
Prokaryotic type
rRNA processing factors
A3780_08750 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
APG17636
LinkDB
All DBs
Position
complement(1909050..1912199)
Genome browser
AA seq
1049 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHISALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLS
LSILRLIEEEALKENTQEVHAIVPVQVASYLLNEKRAAVSAIEARQGGVRCVIVPNDQME
TPHYSVLRVRKGEETPTLSYLLPKLHEEAMALPSEEEYAERKLPEQPALATFVMPDVPPV
PQAPAAAAAPVAKAEPAAVQPTTPGLFSRFFSVLKGLFAGEETPAAVEAQEEKKPAKQDR
QQDRRKPRQNNRRDRSERRDGRAEGSEAREGRENRENRESREENRRNRREKSQQNVETRE
ARQPVAVEETEKTKQRDEQQPSRRERNRRRNDDKRQAQQDVKELNRADADQPEQETEQEE
RVQVMPRRKQRQLSQKVRFEDAQSTDTTEETMAQSTEVAKVDLPAVVETSQDQDENAEAR
ENAMPRRSRRSPRHLRVSGQRRRRYRDERYPLQSAMPLTVACASPEMASGKVWIRYPVPR
AQEEQAKEIAAEENVAVEQEVAPMVDEAALVSAVETEVVEQQPAAEAEVVAPAAETEVTE
PVVVEPQQTVAEPETVEVETSHPEVIAAPVDEQPQLIAEEDRVVAEEVAEEAAPAQEAPA
PIAETAPVVSEESQAPVAEPVKETVVPAVARKVATAPMTKAPAPDYVPEAPRHSDWVRPD
FNFEGKGSAGGHSATHAATAPATKPPSVG
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaagaagagttgcgtgtcgcccttgtggat
gggcagcgcctgtacgatctggatatcgaaagtccggggcacgaacagaaaaaagcgaac
atctataaaggtaaaatcacccgcattgagccgagtcttgaagccgccttcgttgattac
ggtgctgaacgacacggttttctccccctcaaagaaatcgcgcgcgaatatttccccgcc
aattacaacgctcatggccgtcctaatatcaaagatgtgctgcgtgaaggccaggaagtc
atcgtccagattgataaagaagagcgtggcaataaaggcgctgcgctgaccacgtttatt
agccttgcgggcagttatctggtgttaatgccgaataacccgcgcgctggcggcatctct
cgccgcattgaaggcgacgatcgtactgaattaaaggaagccctctccagcctcgaattg
ccggatggcatggggctgattgtacgcacagccggtgtgggtaaatccgccgaagcgctg
caatgggatctgagtttccgcctgaaacactgggaagctatccagaaagccgctgaaagc
cgtccagcgccgttcctgatccatcaggaaagtaacgtcatcgttcgtgctttccgtgac
tacctgcgccaggacattggcgaaatcctcatcgacaacccgaaagtgcttgagctggcc
cgccagcatatctccgcactgggtcgtccggatttcagcagcaaaatcaaactgtacacc
ggtgaaatcccgctgttcagccactaccagattgagtcgcagattgaatctgccttccag
cgtgaagtgcgtctgccgtccggcggctccattgttatcgattccacggaagcactgacg
gctatcgatatcaactccgcacgcgcaacccgcggtggcgatatcgaagaaaccgccttc
aacaccaacctggaagcagccgatgagatcgcccgccaactgcgcctgcgcgatctcggc
ggtctgattgtcattgactttatcgatatgacgccggttcgccatcagcgcgctgttgag
aaccgtctgcgcgaagccgtacgtcaggaccgcgcccgtattcagatcagccatatttcc
cgctttggcctgctggagatgtctcgtcagcgcctgagcccatcgctgggcgaatccagc
caccacgtctgcccacgctgtagcggcaccggtaccattcgtgataacgaatcgctgtcg
ctgtcgattctgcgcctgatcgaagaagaagcgctgaaagagaacacccaggaagtgcac
gcgattgtgccggtccaggtcgcctcttatctgctgaacgaaaaacgtgctgcggtcagc
gctatcgaagcccgccagggcggcgtacgctgcgtgatcgtgccgaacgaccagatggaa
acgccgcactactccgtactgcgtgtgcgtaaaggcgaagagacgccgaccctgagctac
ctgctgccgaagctgcacgaagaagcaatggcgctgccgtcggaagaagagtatgccgag
cgtaaactgcctgagcagcctgcgctggcgacgttcgtcatgccagatgttccgcctgtg
ccgcaagcgcctgctgcggctgctgcaccagttgccaaagccgaacctgccgctgtacaa
cccaccactccggggctgttcagtcgtttcttctcggtactgaaaggtctgtttgcgggt
gaagaaaccccggcagccgtcgaagcccaggaagagaaaaagccagcgaaacaagatcgc
caacaggatcgtcgcaaaccgcgccagaacaatcgtcgcgatcgtagcgaacgccgtgat
ggccgcgctgaaggtagcgaggcgcgcgaaggtcgtgagaatcgcgaaaaccgcgaaagt
cgtgaagagaaccgccgtaatcgccgcgagaaatcgcagcagaacgtggaaactcgcgaa
gcgcgtcagccagtagcggtcgaagagacggaaaaaactaaacagcgcgatgagcagcaa
ccgtcacgccgtgaacgcaaccgtcgccgtaacgatgacaaacgtcaggcacagcaggat
gttaaagaactgaaccgtgccgatgccgatcagcctgagcaggaaactgaacaggaagag
cgcgtacaggtgatgccgcgccgtaagcagcgtcaactgagccagaaagtacgttttgaa
gatgcgcagtccacggatactaccgaagagacgatggctcagagtactgaagtggcgaaa
gtcgatctcccggccgttgtggaaaccagccaggatcaggatgagaatgcggaagcgcgc
gaaaatgcgatgcctcgccgctctcgtcgttctccgcgtcatctgcgcgtcagcggccag
cgccgtcgtcgctaccgtgacgagcgttatccgttgcagtcagccatgccgttaaccgtc
gcatgtgcttcacctgaaatggcttccggtaaggtatggatccgctacccggttccgcgc
gctcaggaagagcaggcgaaagagatcgcggcagaagagaacgttgccgttgagcaggaa
gttgcaccgatggtggatgaagccgcgctggtaagcgctgtagaaaccgaagtggttgag
cagcaacccgcagcagaagcagaagttgtcgcgccagccgctgaaacggaagtgacagaa
cctgtcgttgttgagccgcagcagactgtcgctgagccagaaaccgttgaggtagaaacc
agtcatccggaggttattgccgcgccggttgatgagcaaccgcaactgattgccgaagaa
gatcgtgtcgtcgccgaagaggttgcggaagaagccgcgccagcgcaggaagccccggct
cccatcgccgaaaccgctccggtcgttagcgaagaatcacaggccccggttgcagaaccg
gttaaagaaactgtggtgcccgccgtcgcccgtaaagtagccactgcgccgatgaccaaa
gcgcctgcaccggattatgtaccggaagcgccgcgtcacagcgactgggtacgtcctgac
ttcaatttcgaaggcaaaggctccgcgggcggtcacagcgccacccacgccgccactgca
ccggcaacgaagccgccatctgttggctaa
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