Kosakonia radicincitans: A3780_08900
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Entry
A3780_08900 CDS
T04579
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
krd
Kosakonia radicincitans
Pathway
krd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
krd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A3780_08900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
krd03400
]
A3780_08900
Enzymes [BR:
krd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A3780_08900
DNA repair and recombination proteins [BR:
krd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A3780_08900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
APG17664
LinkDB
All DBs
Position
complement(1939878..1943324)
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEQYRYSLPTKAGDQRQFGELTGAACATEVAEIIERHAGPVVLIAPDMQNALRLQDEIS
QFTDNLVMNLADWETLPYDSFSPHQEIISSRLSTLYQLPAMQRGVLIVPVNTLMQRVCPH
NYLHGHALVMKKGQRLSRDQLRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSDQPF
RLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEFPTDKNAIELFRSQWRDRFEVKRD
AEHIYQQVSKGTLPAGIEYWQPLFFSEPLSPLFSYFPANTLLVNTGDLEASAERFQQETQ
ARFESRGVDPMRPLLPPESLWLRSDALFSELKKWPRIQLKTKRLSEKAAHVNLGYRALPE
LAVQAQQKSPLDNLRKFLESFSGPVVFSVESEGRREALIELLARIKVAPKRILRLDEAST
PGAWLMLGSAEHGFIDTLRNRALICESDLLGERVARRRQDTRRTINPDTLIRNLAELHDG
QPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYAGDAKLYVPVSSLHLISRYAGGAEETA
PLHKLGSDAWARARQKAAEKVRDVAAELLDIYAQRAAKAGFAFKHDREQYQLFCDGFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTL
LAQQHFDNFRDRFANWPVRIEMLSRFRSAKEQSQILEQAAEGKIDILIGTHKLLQSDVKL
KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDSLVVREAILREVLRGGQVYYLYNDVENIQKAAARLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGQMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
NTRLSFYKRIASAKDANALEEIKVELIDRFGLLPDAARNLLDIALLRQQAQKLGIRKLEG
NEKGGIIEFNEKNNVNPVWLIGLLQKQPQHFRLDGPTRLKFMQDLSERKTRMGWVRNFMQ
QLAENAVA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacaatatcgttattcactgccgaccaaagcgggtgaccagcgccagtttggc
gaactcaccggcgccgcctgcgccaccgaagtggcggaaatcattgagcgccatgctggt
cccgtggtgctgatcgcaccggatatgcaaaacgccctgcgcttgcaggacgagataagc
cagtttaccgataatctggtcatgaacctggccgactgggaaactctgccctacgacagc
ttctcgccacaccaggagatcatctcttcccgtctttccaccctctaccagctgccagcc
atgcagcgtggcgtgctgattgtgccggtcaataccttgatgcagcgcgtctgcccgcac
aactatctgcacggccatgcgctggtgatgaaaaaagggcagcggctgtctcgcgatcag
ctgcgcgcgcagctggacagcgcgggttaccgccatgttgatcaggtgatggagcacggc
gaatatgccacgcgcggcgcactgctggatctcttcccgatgggcagcgatcagccgttc
cgtctcgactttttcgacgatgaaatcgacagcttacggctgttcgacgccgatacccag
cgcacgctggaagaggtcgaggcgattaatttactgcctgcgcatgaattcccgaccgat
aaaaatgccattgagctgttccgcagccagtggcgcgatcggtttgaggtgaagcgcgat
gcagaacacatttatcagcaggtgagcaaaggcaccctgcccgccgggatcgaatactgg
cagccgctgttctttagcgaaccgctgtcgccgctgtttagctatttcccggcgaatacg
ctgctggtcaacaccggcgatctggaagccagtgcggaacgtttccagcaggagacgcag
gcgcgcttcgagagccgcggtgtggatccgatgcgcccgctgttgccgccggaaagctta
tggctgcgcagcgacgcgctgttcagcgaactgaaaaaatggccgcgtatccagctcaaa
actaaacggctcagtgaaaaagccgcacacgttaatctcggttatcgcgcgttgccagaa
ctggcggtacaggcgcagcaaaaatcaccgctggataacctgcgtaagttccttgagtcc
ttcagcggcccggtggttttctcggtcgagagcgaaggccgccgcgaagcgctgatagaa
ctgctggcgcgcattaaagtggcgcccaaacgcattttgcgtctcgacgaagcgtcaacg
ccgggcgcctggctgatgctcggttccgcagagcacggttttatcgacaccctacgcaac
cgggcactgatttgcgaaagcgatctgctgggcgaacgcgttgcgcgccgccgccaggat
acgcgacggacgattaatcccgacacgctgatccgtaacctcgctgagttgcacgacggc
cagccagtggtgcatctggaacatggcgtcgggcgttatgccggtatgaccacgctggaa
gccggcggcattaaaggcgaatacctgatgctgacgtacgccggtgacgccaaactttat
gtcccggtctcttcgctgcatctgatcagccgctatgcgggcggcgcagaagagactgcc
ccgctgcataaactgggcagcgatgcctgggcgcgggcacggcagaaagcggcggaaaaa
gtgcgtgatgtggcggccgagctgctggatatctacgcgcagcgcgcggcaaaagcaggt
tttgccttcaagcacgatcgtgaacaatatcaactgttctgcgatggtttccccttcgaa
accacgccggatcaggcgcaggcgatcaacgccgtgctcagcgatatgtgtcagccgctg
gcgatggatcgtctggtgtgcggcgatgtgggtttcggtaaaaccgaagtggcgatgcgc
gcggcattccttgccgtcgaaaacaacaagcaggtggcggtgctggtgccaaccaccctg
ctggcgcagcagcactttgataacttccgcgaccgttttgccaactggccggtacgcatt
gagatgctctcacgctttcgcagcgccaaagagcagtcgcaaattcttgaacaggccgct
gagggcaaaatcgatattctgatcggcacgcacaaactgctgcaaagcgatgtgaagctg
aaagatctcggcctgctgattgtcgacgaagagcaccgcttcggcgtgcgccataaagag
cgcatcaaagcgatgcgtgccgatgtcgatattctgacgctgacggcaacgccgatcccg
cgcacgctgaatatggcaatgagcgggatgcgcgacctgtcgatcatcgccacgccacct
gcgcgccgtctggcggtaaaaacctttgttcgggagtacgacagcctggtggtacgtgag
gcgatcctgcgtgaagtgctgcgcggcgggcaggtctattacttgtataacgatgtggag
aatatccagaaagccgccgccaggctggcggagctggtgccggaagcgcgcatcgctatc
ggtcacgggcagatgcgcgagcgcgaactggaacgggtgatgaacgatttccatcatcaa
cgtttcaacgtgctggtctgcaccaccattattgaaaccgggatcgatattccgaccgcc
aataccattatcatcgaacgcgccgatcactttggtctcgcccagttgcaccagttgcgc
ggacgcgtcggtcgctcacaccaccaggcctacgcctggttgctgacgccgcacccgaaa
gcgatgaccaccgatgcgcaaaaacggctggaagctatcgcctcgctggaggatttgggc
gcaggttttgcgctggcaacgcacgatctggagatccgtggggcgggcgagctgctcggt
gaagatcagagtggccagatggaaaccatcggtttctcgctgtatatggaactgctggaa
aacgcagttgatgcgctaaaggccggtcgcgagccgtcgctggaggatttaaccagccag
cagaccgaggtcgaattgcgcatgccttcgctattaccggacgattttattcctgatgtt
aatacgcgtctgtcgttctataaacgcatcgccagcgcgaaagatgcgaacgcactggaa
gagattaaagtcgaactgatcgatcgctttgggctgctaccggatgcggcgcgtaacctg
ctggatatcgccctgttgcgccagcaagcgcagaagctggggatccgcaaactggaaggc
aatgaaaaaggcggcatcatcgagttcaacgagaaaaacaatgtcaacccggtgtggctg
attggtctgctgcaaaaacagccgcagcatttccgtctggatggtccgacgcggctgaaa
tttatgcaggatctgagcgaacggaaaacccgcatgggctgggtgcgtaattttatgcag
caactggccgaaaacgccgtcgcctga
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