Kosakonia radicincitans: A3780_11935
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Entry
A3780_11935 CDS
T04579
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
krd
Kosakonia radicincitans
Brite
KEGG Orthology (KO) [BR:
krd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
krd03019
]
A3780_11935
Enzymes [BR:
krd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
A3780_11935
Messenger RNA biogenesis [BR:
krd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
A3780_11935
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_22
AAA_19
nSTAND_NTPase5
NACHT
nSTAND3
T2SSE
ResIII
DUF6145
cobW
NTPase_1
PhoH
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
APG18233
LinkDB
All DBs
Position
complement(2611660..2615562)
Genome browser
AA seq
1300 aa
AA seq
DB search
MTEQHTLTISDLLPRLDTLMLRDRQRFARRLHGSKKVKNPESQQALLRQLAQEIADAAGK
VALREAARPQIDYPDNLPVSQKKQVILEAVRDNQVVIVAGETGSGKTTQLPKICMELGRG
VKGLIGHTQPRRLAARTVANRIAEELKTEPGGCIGCKVRFSDHVSDNTMVKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPKRPDLKIIITSATIDPERFSRH
FNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGRESAGDILIFMSGE
REIRDTADALSKRDLRHTEILPLYARLSNSEQNRVFQPHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGICIRLYSEDDFLSR
PEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQ
QTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPLDKKQA
SDEKHQRFHDKESDFLAFVNLWNYLGEQQKALSSNQFRRQCRVDYLNYLRVREWQDIYTQ
LRQVVKELGIPVNSEPAEYREIHIALLTGLLSHIGMKDAEKQEYTGARNARFAIFPGSGL
FKKPPKWTMVAELVETSRLWGRIAARIDPEWVEPVAQHLIKRSYSEPHWERAQGAVMATE
KVTVYGLPIVAARKVNYSQIDPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELE
HKSRRRDILVDDETLFEFYDQRISLEVISARHFDSWWKKASRETPDLLNFEKSMLIKEGA
ENVSKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQVNESGFEWQIPGLRR
ELVIALIKSLPKPTRRNFVPAPNYAEAFLGRVTPLELPLLDALERELRRMTGVIVDRDDW
HWDQVPDHLKISFRVVDDKNKKLLEGRSLAELKESLKGKVQETLSAVADDGIEQSGLHIW
SFGTLAESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPQEQQQAMWRGIRRLLLLNIPS
PIKYLHEKLPNKAKLGLYFNPYGKVLDLIDDCISCGVDKLIDEAGGPVWTEEGFAALHEK
VRAELNETVVEIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDIKAQMGGLVYRGFVTG
NGFRRLGDTLRYLQAIEKRLEKLAVDPHRDRAQMLKVEQTQQAWQQWLNKLPPARRDDDD
VKEIRWMIEELRVSYFAQQLGTPYPISDKRILQAMEQISA
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacaacataccttaacgatttccgatctattgccgcgtctcgacaccctgatg
ttacgcgacagacaacgcttcgctcgccgtctgcatggcagcaagaaagttaaaaatcct
gaatctcagcaggcactgctgcggcaactggcgcaggagattgccgacgcggcgggaaaa
gtagcgctgcgcgaagcggcgcgtccgcagattgattacccggataacctgccggtcagc
cagaagaaacaggtcattctcgaagcggtgcgcgataaccaggtggtcatcgtcgccggt
gagaccggttccggtaaaacgacccagttaccgaaaatttgcatggagctggggcgcggc
gtgaaaggcctgattggccacacacagccgcgtcgtctggcggcgcgcaccgtggcgaac
cgtattgctgaagagttgaaaacggaaccgggcggctgcatcggttgcaaagtccgtttt
agcgatcatgtcagcgataacacgatggttaaactgatgaccgacggtatcctgctggcg
gaaatccagcaggatcgtctgctgatgcagtacgacaccatcatcatcgatgaagcgcac
gaacgcagcctgaacatcgatttcctgctcggttacctgcgtgagctgctgccgaagcgc
ccggatctgaaaatcatcatcacttctgcgacgatcgatccggaacgtttttcgcgccat
ttcaataatgcgccaatcattgaagtttccggccgtacgtatccggtggaagtgcgctat
cgcccgattgttgaagaagcggatgacacggaacgcgatcagttacaggcgatttttgat
gcggtcgatgagctcggccgtgaaagcgcgggcgatattctgatctttatgagcggcgag
cgtgaaattcgtgataccgccgatgcgctgagcaaacgcgatctgcgccataccgagatt
ctgccgctgtatgcgcgtttgtcgaacagcgagcagaaccgtgttttccagccgcacagc
gggcggcgtatcgtgctggcgactaacgtggcagaaacctcgctgaccgtgccgggcatc
aaatatgtgatagatccaggcacggcgcgcatcagtcgttacagctatcgcactaaagtg
cagcgtttgccgatcgagccggtttcgcaggcttccgctaaccagcgtaaaggccgctgc
ggtcgcgtttcggaagggatctgtattcgtctctattcggaagatgattttctgtcgcgc
ccggaatttaccgatccggaaattctgcgtaccaacctggcgtcggtcattttgcaaatg
acggcgctggggctgggcgatatcgccgcattcccgtttgtcgaagcgccggataaacgc
aatattcaggatggcgtgcgcctgctggaagagcttggggccattacgaccgatgagcag
caaaccgcctataaactgacgccgcttggccgtcagctttcacaactgccggtggatccg
cgcctggcgcgtatggtgctggaagcgcagaaacatggctgcgtgcgtgaagcgatgatc
atcacgtcggcgttgtcgattcaggatccgcgcgaacgtccgctggataaaaagcaagcg
tcggatgaaaaacatcagcgcttccacgacaaagagtctgatttccttgcctttgtgaac
ctgtggaactacctcggcgagcagcaaaaagcgctctcttcgaatcagttccgccgtcag
tgccgggtggattacctcaactatctgcgcgtgcgcgaatggcaggatatctacacccaa
ctgcgccaggtggtaaaagagttaggcattccggtgaacagcgagccggcagagtaccgc
gaaattcatatcgcgctgctgaccgggctgttgtcgcatatcggcatgaaagatgcggaa
aagcaggaatataccggcgcgcgcaatgcccgtttcgccatcttccccggttcgggttta
tttaaaaagccgccaaaatggaccatggtcgcggagctggtggaaaccagccgtctgtgg
gggcgtattgctgcacgcatcgatccggagtgggtggagccggttgcacagcatctgatc
aaacgttcgtacagcgagccgcactgggagcgggcgcagggcgcggtgatggcgacagaa
aaagtcaccgtttacgggctgccgattgtcgccgcgcgcaaggtgaactacagccagatc
gatccggcgctgtgccgcgagttgtttattcgtcatgcgctggtggaaggcgactggcaa
acccgtcacgcttttttccgcgagaacctgaaactgcgcgctgaagtggaagagttggaa
cataaatcccgccgtcgcgacattctggtggatgatgagacgctgtttgagttctacgac
cagcgcatcagccttgaggtgatttcggcccgtcattttgatagctggtggaaaaaggcc
agccgcgaaacgccggatttgctcaactttgaaaagagcatgttgattaaagagggtgcg
gaaaacgtcagcaaactcgactatccgaacttctggcatcagggcaaccttaagctgcgg
ctgagctaccagtttgagccgggcgcggatgctgacggcgtgacggtacatatcccgctg
ccgttgctgaatcaggtgaacgagagtggctttgaatggcagatccccggcctgcgccgc
gagctggtgattgcgctcatcaaatcactgccaaaaccgacgcgccgcaattttgttccg
gcgccgaattatgccgaagcctttcttggtcgcgttacgccgctggagctgccgctgctg
gatgcgctggagcgcgaattacgccgtatgaccggtgtgatcgttgaccgcgatgactgg
cactgggatcaggtgcccgatcacctgaaaatcagcttccgcgtggtggatgacaaaaac
aagaagctgctggaagggcgctcgctggcggaactgaaagagagcctgaaaggtaaagtg
caggaaacgctgtctgcggttgccgatgacggcatcgagcagagcgggctgcatatctgg
agtttcggcacactggcggaaagctacgaacagaagcgcggtaactataaggtgaaagcc
tggccagcgctggtggatgaacgtgacagtgtcgcgatcaagctgttcgataatccgcag
gagcaacaacaggcaatgtggcgcggtatccgccgtctgctgctgttgaatattccgtcg
cccataaaatatctgcacgaaaaattgccgaataaggccaagctgggcctctactttaac
ccgtacggcaaagtgctggacctgattgatgactgtatctcctgcggcgtcgacaagctg
atcgatgaagcgggcggcccggtatggacggaagagggttttgccgcgctgcatgaaaaa
gtgcgcgccgaactgaacgaaacggtggttgagatcgccaaacaggtcgaacagatcctc
actgcggtgttcaatatcaacaagcgtctgaaagggcgcgtcgatatgaccatggcgctg
gggctgtcggatatcaaagcgcagatgggcgggctcgtttaccgcggttttgtgaccggc
aacggtttccgccgtctgggtgatacgctgcgctatttacaggcgatcgaaaaacggctg
gagaaactggcggtcgatccgcatcgtgatcgcgcgcagatgctgaaagtggagcagacg
cagcaggcgtggcagcagtggctgaataagctgccgcccgctcgccgcgatgatgatgat
gtgaaagagatccgctggatgatagaagagctgcgcgtcagctattttgcccagcagctc
ggaacaccttatcccatctccgataagcgcattttgcaggcgatggaacaaatcagcgcc
tga
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