Kosakonia radicincitans: A3780_12145
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Entry
A3780_12145 CDS
T04579
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
krd
Kosakonia radicincitans
Brite
KEGG Orthology (KO) [BR:
krd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
krd03016
]
A3780_12145
Enzymes [BR:
krd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
A3780_12145
Transfer RNA biogenesis [BR:
krd03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
A3780_12145
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
ODP
Motif
Other DBs
NCBI-ProteinID:
APG18271
LinkDB
All DBs
Position
2660109..2662043
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRAEGVVKGTEKGFGFLEVDAQKSYFIPPPQMKKVMHGDKI
IAVIHSDKDRESAEPEELVEPFLTRFVGKVQKKDDRLSIVPDHPLLKDAIPCRAARGVEH
DFKEGDWAVAEMRRHPLKGDRGFYAELTQFITFAEDHFVPWWVTLARHNLEKEAPNGVAT
EMLDDGLQRVDLTALDFVTIDSASTEDMDDALFVEETADGKLQLTVAIADPTAWIAEGSK
LDDSAKVRAFTNYLPGFNIPMLPRELSDDLCSLRANEIRPALVCRMTLDDEGSIEENIEF
FAATIESKAKLVYDEVSDWLENTGSWQPANEAIAAQIRLLHRVSQLRSQWRQTHALVFKD
RPDYRFVLGEKGEVLDIVAESRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHLGFD
PANSEQLAAMLKTHGMHVDAEEVLTLEGFCKLRRELDAQPSGFLDSRIRRFQSFAEISVA
PGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAIIKGETPKRPQDETTVQMAERRRLNRM
AERDVGDWLYARFLQNKAGTDTRFAAEIIDVSRGGMRVRLVDNGAVAFIPAPFIHAVRDE
LVCSQENGTVQIKGETAFKVTDVIDVTIAEVRMETRSIIARPAL
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaggacaacccgctgctagcgcagcttaaacagcaacttcattcccagacacca
cgcgcggaaggtgttgtaaaaggcacggaaaaaggcttcggatttctggaagtcgatgcg
caaaaaagctacttcattccgccgccgcagatgaagaaagtgatgcacggtgacaaaatc
atcgccgtcattcacagcgacaaagatcgcgaaagcgcagaacctgaagagctggtcgag
ccgtttctgacccgttttgtcggtaaagtgcagaagaaagacgatcgtctttccatcgta
ccggatcatccgttgctaaaagacgccattccctgccgcgcggctcgcggcgtggaacat
gattttaaagaaggcgactgggccgttgcggaaatgcgtcgccatccactcaaaggcgat
cgcggcttctatgccgaactgacgcagtttattacctttgcggaagaccattttgttccg
tggtgggttaccctggcgcgccataatctggaaaaagaagcgccgaacggcgtggcgacg
gaaatgcttgatgacggtctgcaacgcgtcgatctgaccgcgctggatttcgtcactatc
gacagcgccagcactgaagatatggacgatgcgttgtttgtggaagagaccgccgacggc
aaactgcaactgaccgttgctatcgccgatcctaccgcgtggattgctgaaggcagcaag
ctggatgattccgccaaagtgcgcgccttcaccaactatctgccgggctttaatatcccg
atgctgccgcgcgaactctccgacgatctctgctctctgcgcgcgaacgaaatccgccct
gcgctggtttgccgcatgacgctggatgacgaaggtagcatcgaagagaatatcgaattc
tttgccgccaccatcgaatcgaaagccaaactggtttacgacgaggtctccgactggctg
gaaaataccggctcatggcaaccggcgaatgaagcgattgccgcgcagatccgtctgctg
catcgcgtaagccagcttcgttcacagtggcgtcagacccacgcgctggtgttcaaagat
cgcccggattaccgctttgtgctgggtgaaaaaggcgaagtgctggatatcgtggccgaa
tcgcgccgcattgcgaaccgcattgttgaagaggcgatgatcgccgccaatatctgcgcc
gctcgcgttctgcgcgacaagctgggcttcggtatttataacgtgcaccttggttttgat
ccggcgaacagcgagcagctggccgccatgctgaaaacccatggcatgcatgttgatgcg
gaagaagtgctgacgctggaaggtttctgcaaactgcgtcgcgaactggatgctcaaccg
tcaggcttcctcgacagccgtattcgccgcttccagtcgtttgccgagatcagcgttgcg
ccaggcccgcacttcggtcttggcctcgaagcgtatgccacctggacttcaccaatccgt
aagtacggcgatatggttaaccatcgtctgctgaaagcgattattaaaggtgaaacgccg
aagcgtccgcaggacgaaaccaccgtgcagatggctgaacgtcgccgtctgaatcgcatg
gctgaacgcgatgtcggtgactggctgtacgcccgtttcctgcaaaacaaagccggtaca
gacacccgttttgcggccgagattatcgatgtcagccgtggtggcatgcgcgtgcgcctg
gtcgataacggcgccgtcgcgtttattccggcccctttcattcacgctgtgcgtgatgag
ctggtttgcagccaggaaaacggcacggtgcaaatcaaaggcgaaacagcgtttaaagtg
acggatgttattgatgtcacgatcgccgaagtgcgcatggaaacccgcagcattatcgcg
cgtccggccctgtaa
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