Kosakonia radicincitans: A3780_19400
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Entry
A3780_19400 CDS
T04579
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
krd
Kosakonia radicincitans
Pathway
krd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
krd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
A3780_19400 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
krd03400
]
A3780_19400 (recB)
Enzymes [BR:
krd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
A3780_19400 (recB)
DNA repair and recombination proteins [BR:
krd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
A3780_19400 (recB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_25
AAA_11
Cas_Cas2CT1978
Motif
Other DBs
NCBI-ProteinID:
APG19619
LinkDB
All DBs
Position
complement(4214950..4218510)
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AA seq
1186 aa
AA seq
DB search
MSETTAETLDPLRLPLTGERLIEASAGTGKTFTIAALYLRLLLGLGGNAAFPRPLSVEEL
LVVTFTEAATEELRGRIRSNIHELRIACLRESSSNPLYARLLEEIADKQQAAYWLMLAER
QMDEAAVFTIHGFCQRMLSLNAFESGMLFEQQLVEDESLLRYQACADFWRRHCYPLPREI
AQAIHASWKGPQELLKAIDRYLQGEAPQIKSPPPADETLVSRHQSIIARIEAIKQQWNAA
VAEVEPVIEASGIDRRKFNRGNQAKYIERVSAWAQEETRSYLLPEALEKFAQSFLAERTK
ADGVVPEHPLFVAIEELLAQPLTLDDLVLTSAMREIREAVAKEKRRRGELGFDDMLSRLD
SALRSPNGEALAAAIRERFPVAMIDEFQDTDPQQYRIFSRIWHEQPECGLLLIGDPKQAI
YAFRGADIFTYMKARDEVSARYTLDTNWRSSPGMIASVNRLFMQMEDAFMFRQIPFLPVK
SAAKNAGLRFTFRGEMQPAMKMWLMDGEGVGVGDYQGFMAQLCASQIRDWLSAGQQGEAL
LYEGEGEHEKVRPVRASDITVLVRSRHEASLIRDALMLLDIPSVYLSNRDSVFDTPEAQE
LLWLLHAVLAPERESTLRSALATSMLGLTAQDIEALNLDEQAWDEKVEEFSHYRELWQKR
GVMAMLRTLMSARNVAENLLATPGGERRLTDILHISELLQEAGTQLESEHALTRWLAQRI
AEPNANASSEQLRLESDKHLVQIVTIHKSKGLEYPLVWLPFIANFRVQDQGFYHDRESFA
AMLDLSHGDESVELAETERLAEDLRLLYVALTRSVWHCSLGIAPLIRRRGGKTGETDFHQ
SALGRLIQKGEALDAAGLQRALQALCNDDIALCTPPAADSDRWQLPQTALPALSAREVTR
KIADDWRVTSYSGLQQRAHGIAQDLLPRLDIDAAGEHEVVAEPMLTPHQFPRGAAPGTFL
HSLFEDLDFTQPISPQWVAERVLAGGYEEHWEPVLRRWLESVLHAPLAGTGISLSQLTAK
EKQVEMEFYLPVTKTMSAQALDALIRRYDPLSAGCPPLDFRDVRGMLKGFIDLVFRHDGR
YYLLDYKSNWLGESAEAYTQEAMATAMQSHRYDLQYQLYSLALHRYLRHRIADYRYEQHF
GGVIYLFLRGVEAQNPQQGIFTTRPDAALIEQMDALFAGETQEATP
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaaaccactgctgagacccttgatcccctgcgcttgccgcttaccggcgagcgc
ctgattgaagcctcggcgggcaccggcaagacattcaccatcgccgcactctatttgcgg
ctgctattagggctgggcggcaatgccgccttccctcgaccactcagcgttgaagagctg
ctggtggtgactttcaccgaggccgcgaccgaagagctgcgtggccgtatccgcagtaat
atccatgagttacgtattgcctgcctgcgggaaagcagcagcaaccccttatatgcccgt
ttgctggaggagatcgccgataagcagcaggcggcgtactggctgatgctggccgagcgg
caaatggatgaagcggcagtctttaccattcatggcttctgccagcgcatgctcagcctg
aacgcgttcgaatccggcatgctgtttgaacagcaactggtggaagatgaatccctgttg
cgctatcaggcctgcgcggatttctggcggcgtcactgctacccgctgccgcgcgagatt
gcccaggcgattcatgcctcgtggaaagggccgcaggaactgctgaaggcgatcgatcgc
tacctgcagggcgaagcgccgcaaatcaaatccccaccgccggcagatgaaacgctggtt
tcccgccatcagagcattatcgcccggattgaagctatcaagcagcagtggaacgccgcg
gtggccgaagtggaaccggtgattgaagcgtccggcatcgaccggcgaaaattcaaccgc
ggcaaccaggcaaagtatattgagcgagtgtccgcctgggcgcaggaggagacgcgcagt
tacctgctgccggaggcactggagaagtttgcccagtctttccttgctgaacgcaccaaa
gcggatggcgtggtgccggaacatccgctttttgtcgcaatcgaggaactactggctcag
ccgttaacgcttgacgatctggtgctgaccagcgcaatgcgtgaaatccgcgaggcggtg
gcgaaagagaagcgtcgtcgcggcgaactgggctttgacgatatgctcagccgtctggat
agcgcattgcgcagcccgaacggcgaggcgctggccgctgcgatccgcgaacgcttcccg
gtggcgatgatcgatgaatttcaggataccgatccgcagcaataccgtattttcagccgt
atctggcatgagcagccagagtgcggtctgttgttgattggcgacccgaagcaggccatc
tatgcgtttcgcggcgccgatatttttacctatatgaaagcgcgcgatgaagtgagcgct
cgctatacccttgataccaactggcgctcgtcgccgggaatgattgccagcgttaaccgc
ctgtttatgcagatggaagacgcctttatgtttcgccagatcccattcctgccggttaaa
tccgccgctaaaaatgcgggcctgcgctttacctttcgtggggaaatgcagccagccatg
aaaatgtggctgatggacggcgaaggcgtcggcgtcggcgattaccaggggtttatggcg
cagctctgcgcctcgcagatccgcgactggctgagtgctggccagcagggcgaggcactg
ctgtacgaaggtgagggcgagcatgagaaagtgcgtccggtcagagcctcggatatcacc
gtgctggtgcgtagccgccacgaagcgtcgcttattcgtgatgccctgatgctactggat
atcccctccgtctatctctctaaccgcgacagcgtgttcgacacgccggaagcgcaggag
ctgttgtggctgttgcatgccgtgctggcgccggagcgagagagtacgttgcgtagcgca
ttagccacctccatgctggggttgaccgcacaggatattgaagcgctgaatctcgatgaa
caggcgtgggatgagaaagttgaggagttctctcactaccgcgaactatggcaaaaacgc
ggtgtgatggcgatgctgcgcacgttgatgagtgcgcgcaatgtggcagagaatttactg
gcgacgcctggcggtgagcggcggttaaccgatattctgcatatcagcgagctgttgcag
gaagccggaacgcagcttgaaagtgagcatgcacttacccgctggctggcgcagcgcatc
gccgaaccgaatgccaatgcctccagcgagcagttgcgtctggagagcgacaaacatctg
gtgcagattgtcaccatccacaaatccaaaggccttgagtacccgctggtctggctgccg
tttattgcgaatttccgcgtacaggatcagggtttctatcatgaccgcgaatcgtttgcg
gcgatgctcgatttaagccacggcgacgagagtgtcgaactggcggaaaccgagcgcctg
gcggaagatttgcgcctgctctatgtggcattaacgcgctcggtctggcattgcagcctg
gggattgcgccgctgattcgccgtcgcggtggcaaaacgggcgaaactgatttccatcag
agcgcgcttgggcggctgattcagaaaggtgaagcgctcgatgctgccggtttgcagcgt
gcattacaggcgctgtgcaatgacgatatcgccctttgcacgccgccagccgctgatagc
gaccgctggcagctgccgcaaacggcgttgcctgctctgagcgcacgggaagtgacgcgt
aaaattgccgacgactggcgcgtgaccagctattccggcttgcagcagcgtgctcacggc
atcgcccaggatctactgccgcgtctggatatcgatgcagccggtgagcatgaggttgtt
gctgaaccgatgctaacgccacaccagttcccgcgtggcgcagcgccgggaaccttttta
catagcctgtttgaagatctggattttacccagccaatctcgccgcaatgggtggcagaa
agagtgctggcagggggttacgaagagcactgggagccggtactgaggcgctggctggag
agcgtgctgcatgcaccgctggccggaacgggcatttcgctgagccagcttacggcgaag
gagaaacaggtggagatggagttctacttgcctgtgacgaagacgatgagcgctcaggca
ctggatgcgctaatccggcgctacgatccgctgtcggcagggtgcccgccgctcgatttc
cgcgatgtgcgcggcatgctgaaaggctttatcgatctcgtctttcgccacgacgggcgc
tactacctgctggattacaaatccaactggctgggcgaaagcgcggaggcctatacgcag
gaggcgatggcgacggcaatgcagtcgcaccgctacgacttgcagtatcaattatatagc
ctggcgctgcatcgttacttgcgccaccgcatcgcggattaccgctatgaacagcatttc
ggcggcgtaatctacctctttttacgtggcgttgaggcgcaaaacccgcagcagggtatc
ttcaccacgcgtcctgacgcggcactgatcgaacagatggatgcgttatttgccggagag
acgcaggaggcgacgccatga
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