Kosakonia radicincitans: A3780_21960
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Entry
A3780_21960 CDS
T04579
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
krd
Kosakonia radicincitans
Pathway
krd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
krd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A3780_21960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
krd03019
]
A3780_21960
03009 Ribosome biogenesis [BR:
krd03009
]
A3780_21960
Enzymes [BR:
krd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A3780_21960
Messenger RNA biogenesis [BR:
krd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A3780_21960
Ribosome biogenesis [BR:
krd03009
]
Prokaryotic type
rRNA helicases
A3780_21960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
APG20097
UniProt:
A0AAX2ETS3
LinkDB
All DBs
Position
complement(4748113..4750029)
Genome browser
AA seq
638 aa
AA seq
DB search
MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAF
SLPLLHNIDPDLRAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVYGMRKNEALVRFL
ESEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPSSEEEMDI
ETLAAALLKMAQGERPLILPPDAPMRPKREFRERDDRFERRGDRNDRSPRGERSERGGED
RPRRERRDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGSHSTIELP
KGMPGEVLQHFTRTRILNKPMNMQLLGDAQPRERNERRGGGAGAGERRGGFGGERREGGR
GEGRRFSGERQEGRSFAGERRAPRRDRDESSSRRRNDA
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggctgaattcgaaaccacttttgcagatctggggctgaaggctcctatccttgaagcc
ctgaacgatctcggttacgaaaaaccatctccgatccaggctgagtgcattccgcacctg
ctgtctggtcgtgacgtactgggcatggcccagactggtagcggtaaaaccgcagcgttt
tcccttccgctgcttcataacatcgatccggacctgcgtgcgccgcagatccttgtgctt
gctccgacccgcgaactggcggttcaggtagctgaagcaatgaccgatttttctaaacat
atgcatggcgtaaacgtggttgctctgtacggcggccaacgttatgacgtgcaattacgt
gccctgcgccaggggccgcagatcgtcgtcggtacgccggggcgtctgctggatcacctg
aaacgcggtacgctggatctctctaaactgagcggtctggttctggatgaagccgacgaa
atgctgcgcatgggctttatcgaagacgttgaaacgattatggcgcagatcccggaaggt
catcagaccgcgctgttctctgcaaccatgccggaagcgatccgtcgcattacccgccgc
tttatgaaagagccgcaggaagtgcgcattcagtccagcgtaaccactcgcccggacatc
agccagagctactggacggtgtacggcatgcgcaaaaacgaagcgctggttcgtttcctc
gaatcggaagattttgatgcggcgatcatcttcgttcgtaccaaaaacgcgacgctggaa
gtggctgaagccctggagcgcagcggctataacagcgctgcgctgaacggcgacatgaac
caggcgctgcgtgagcagaccctggaacgcctgaaagatggtcgtcttgatatcctgatc
gcaacagacgttgcggcgcgtggtctggacgttgagcgtatcagcctggtcgttaactac
gacattccgatggattctgaatcctacgttcaccgtatcggccgtaccggtcgtgcgggt
cgcgctggccgcgcactgctgttcgttgagaaccgcgagcgtcgtctactgcgcaacatc
gaacgtaccatgaagctgaccattccggaagtcgagctgccgaacgcagaactgcttggc
aaacgccgtctggaaaaattcgccgcgaaagtacagcagcagctggaaagcagcgatctg
gatcaataccgcgcgctgctggcaaaaatccagccttcttctgaagaagagatggacatt
gaaacgctggccgctgcgctgctgaaaatggcacagggcgaacgtccgctgattctgccg
ccggatgcgccgatgcgtcctaagcgtgaattccgcgagcgtgatgaccgtttcgaacgc
cgtggcgatcgcaatgaccgcagcccgcgtggcgagcgttccgagcgcggtggtgaagat
cgcccgcgtcgtgaacgtcgtgacgttggtgaaatggaactgtaccgcattgaagtgggc
cgtgatgacggtgttgaagttcgtcatatcgtcggcgcgattgctaatgaaggcgatatc
agcagccgttatattggtaacatcaagctgtttggttcccactccaccattgagctgccg
aaaggtatgccgggtgaagttctgcagcacttcacgcgtacgcgtattctcaacaaaccg
atgaatatgcagttgctgggcgatgcacagccgcgcgagcgtaacgaacgtcgcggtggc
ggtgccggtgccggtgagcgccgtggtggcttcggtggcgaacgtcgtgaaggcggtcgt
ggcgaaggccgtcgtttcagcggtgagcgtcaggaaggccgtagttttgctggcgaacgt
cgtgctccgcgccgcgatcgtgacgaaagctccagccgtcgtcgcaacgacgcataa
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