Kosakonia radicincitans: A3780_24760
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Entry
A3780_24760 CDS
T04579
Name
(GenBank) pectate lyase
KO
K22994
pectate disaccharide-lyase [EC:
4.2.2.9
]
Organism
krd
Kosakonia radicincitans
Pathway
krd00040
Pentose and glucuronate interconversions
krd01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
krd00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
A3780_24760
Enzymes [BR:
krd01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.9 pectate disaccharide-lyase
A3780_24760
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Gene cluster
GFIT
Motif
Pfam:
Beta_helix
Pel9A-like_beta_helix
Motif
Other DBs
NCBI-ProteinID:
APG20619
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Position
5332590..5334698
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AA seq
702 aa
AA seq
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MNYKIPLALTVCSSLIAFPSSATVWKAIAFGQSTDVNFSSNVLPEKIGVNDVTIDGKKLS
VTDSADLSRSVTLESRGGKIANAHDGLTFFYTTLPGSENFVLQATVTVEQFGPENGAKPA
AQEGAGLLVRDVIGNPRQQPLKEGYEEFPAASNMVMNAIMTQDKKDNFRVKMQAISREGI
TQPWGNAGAAIVKQSYQEEIDLRQTPTFRLKLERTNDGFITAWAPQGSDQWVSRSVPRAD
LISIQDKDHYYVGFFASRNAKITISDASLTTSTAHTAVTKPWQAKPLPVVVQIASPAQSS
SDKYTLQARANYDGLFSTRQDEVVIGNEKPVKAGEMYTLPATLSGNATFAVTFMPTSASD
NTPVSQQIKVEKIAGPTAATLYVAPQGKSEGKGTAASPLDLTSAIRLLPPGGKIVLQAGD
YAQTEIPLSASGVRDKQKILQADGKAVIHGLLIDASYWHIKGIEVTEKSLRIQGSHNVIE
KVVAWRNDDTGIQISSPEKVGRALWASNNLVVDSESWGNEDPGKINADGFAVKMRVGEGN
HLKRCYSHDNIDDGFDLFNKIEDGANGVVVIEDSIASNNTSNGFKLGGEGQPVAHQVRNS
KAIGNHLDGFTDNFNPGKLRVENNIAVDNQRFNFIFRPAPYGDASTQGVFSGNISVRSKP
GKYDDSVVGNVDATNYFIVGGKSVNLAQKELDSKPYLVQLSQ
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgaattataaaatacctctggctttaacggtttgcagctcgcttatcgcttttccatca
tcagccacagtctggaaagcaatcgcttttggccaatcgaccgacgtgaacttttcatcg
aatgttctgccggaaaagattggcgtgaatgatgtcaccattgacggcaaaaaactctcc
gtaacggacagtgccgatctctccaggtccgttaccctcgaaagccgaggtggtaaaatc
gccaacgctcatgacggcctgacgttcttttataccactttgcctggcagtgaaaacttc
gttttacaggccaccgtgaccgttgagcagttcggcccggaaaacggcgcgaaacccgcg
gcacaggagggtgccggattgctggtgcgtgacgtgattggcaatccgcgtcagcagccg
cttaaagaaggttatgaggagtttcctgcggcgtcgaatatggtgatgaatgccatcatg
acgcaggataaaaaagacaattttcgcgtgaagatgcaggcgatctcccgtgaagggatc
acgcagccctggggtaatgctggtgcggcaatagtgaaacagagctatcaggaagagatt
gatctgcgccagacgccgacctttcgcctgaaactggagcgcaccaacgacggttttatc
acggcctgggcgccgcaaggcagcgaccaatgggttagccgcagcgtaccgcgcgcagat
cttatctccatacaggataaggatcattattacgtcggtttctttgcctcgcgtaatgcc
aaaatcaccatcagcgatgcttcgttgaccacttcaacggcgcataccgctgtgacaaaa
ccctggcaggctaaaccgctaccagtcgtggtgcaaattgcctctcctgcgcaaagcagc
agcgacaaatacacattacaggcacgagccaattatgatggcctgttcagtacccggcag
gacgaagtggtgatcggtaatgaaaaaccggttaaagcgggggaaatgtataccctgccc
gccacactgagtggcaatgccacgtttgcagtgacatttatgcccaccagcgccagcgac
aatacgcctgtcagccagcagattaaggtagagaaaattgccggcccgacagcagcaacg
ttgtatgtcgccccccagggtaaaagcgaaggtaaaggtacggctgcatcccctctggat
ctgaccagcgcgattcgcttactgccgccaggcggcaaaattgtgttgcaggccggggat
tatgcacaaacggagatccctctttccgccagtggagtgcgcgataaacagaaaatcctg
caagcggatggaaaagccgtgatccacggcttgctgattgacgccagctactggcacatt
aaaggtatagaagtgaccgagaaaagcttgcgtattcagggcagccataacgtcatcgaa
aaagtggtcgcctggcgtaatgacgataccggtattcagatttcatcgccggaaaaagtg
ggccgcgccctgtgggcgagcaacaacctcgttgtcgattcggaatcctggggtaatgaa
gatccggggaaaattaacgctgatggttttgccgtgaagatgcgcgttggcgaaggcaat
cacctgaaacgctgctattcacatgacaatattgatgatggttttgacctgtttaacaaa
atcgaggatggcgcaaatggcgttgtggtgatcgaggattctattgccagcaacaatacc
agtaacggtttcaaactggggggcgaagggcaaccggtcgcgcatcaggttcgtaacagt
aaggcgataggtaatcatctggatggttttaccgataacttcaatccggggaaactgcgg
gttgaaaacaatattgctgtcgataaccaacgctttaatttcatctttcgtccggccccg
tatggcgatgcgtcaacgcaaggcgtgtttagcggcaacatatctgtgcgcagtaagccg
gggaaatatgatgattcagtggtggggaatgtggatgcgacgaactactttatcgtcggc
ggtaaaagcgtaaatctggcgcaaaaagaactggatagtaaaccgtatctggtgcaactc
agccagtga
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