Kosakonia radicincitans: A3780_25505
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Entry
A3780_25505 CDS
T04579
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
krd
Kosakonia radicincitans
Pathway
krd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
krd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A3780_25505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
krd03019
]
A3780_25505
Enzymes [BR:
krd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A3780_25505
Messenger RNA biogenesis [BR:
krd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A3780_25505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CCDC138_C
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
APG20751
UniProt:
A0AAX2EZJ7
LinkDB
All DBs
Position
complement(5496478..5497746)
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AA seq
422 aa
AA seq
DB search
MSKTHLTEQKFSDFALHPKVIEALENKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKT
MAFLTSTFHYLLSHPAIEDRKVNQPRAIIMAPTRELAVQIHADAEPLAQSTGLKLGLAYG
GDGYDKQLKVLESGVDILIGTTGRMIDYTKQNHINLAAVQVVVLDEADRMYDLGFIKDIR
WLFRRMPAATQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSN
EEKMRLLQTLIEEEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILD
EFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGNSISLA
CEEYALNLPAIETYIGHSIPVSKYNPDALLSELPPPKRLTRSRSGNGPRRSGGAPRNRRR
SG
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacatttaactgaacagaagttttccgacttcgccctgcacccaaaggtg
atcgaagcccttgaaaataaagggtttcataattgcacgcctatacaggctctggctctt
ccgctgacgctggcgggccgtgacgttgcaggtcaggcgcaaaccggtaccggtaaaacg
atggcgtttttaacgtcaacgtttcattatctcctctctcacccggcgatcgaagaccgt
aaagtgaaccagccgcgcgcaattattatggcgccgacgcgtgaactcgcggtacaaatt
catgccgatgcagaaccgcttgcgcagtcaacaggtctgaaactgggtctggcttatggc
ggtgatggttacgacaaacagctaaaagtgctggaaagcggcgtcgatattctgatcggc
acaaccggtcgtatgatcgattacaccaaacagaaccatattaacctggccgcagttcag
gtcgtggtgctggacgaagccgatcgtatgtacgatttgggctttattaaagatatccgt
tggctattccgccgcatgccggcagccacacagcgtctgaacatgctgttctccgccaca
ctctcttatcgggtacgtgaactcgcattcgagcagatgaacaacgcagaatacgtcgaa
gtggaaccggaacagaaaaccggccaccgcattaaagaagagcttttctatccttctaat
gaagagaaaatgcgtctgctgcaaacgttgattgaagaagagtggccggatcgcgccatt
attttcgccaacaccaaacatcgctgtgaagatatctggggccatctggctgccgatggt
catcgtgttggtctgctgactggcgatgtagcgcagaaaaaacgcctgcgtattcttgat
gaattcacccgcggcgatctcgatattctggtcgctacggacgttgcggcgcgcggtctg
catattccagccgttacccacgtctttaactacgatctgccggacgactgcgaagactac
gtgcaccgcatcggccgtacgggtcgtgcgggcgccagcggcaactctatcagccttgct
tgtgaagagtacgcgctgaacctgcccgcaattgaaacgtatatcgggcactcaattccg
gtgagcaaatacaatccggatgcgctgctcagcgaattaccgccgccgaaacgcctgacg
cgttcgcgctcaggtaacggtccgcgccgcagtggtggtgcgccacgtaatcgccgtcgt
tcaggttaa
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