Kosakonia radicincitans: A3780_25675
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Entry
A3780_25675 CDS
T04579
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
krd
Kosakonia radicincitans
Pathway
krd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
krd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A3780_25675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
krd03019
]
A3780_25675
03400 DNA repair and recombination proteins [BR:
krd03400
]
A3780_25675
Enzymes [BR:
krd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A3780_25675
Messenger RNA biogenesis [BR:
krd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A3780_25675
DNA repair and recombination proteins [BR:
krd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
A3780_25675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
APG20781
UniProt:
A0AAX2EZN8
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All DBs
Position
5530677..5532503
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AA seq
608 aa
AA seq
DB search
MAQAEVLNQESLAKQVLQETFGYQQFRPGQQDIIDTVLSGRDCLVVMPTGGGKSLCYQIP
ALVLQGLTVVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQFDVINGCRNGQIRLLY
IAPERLMLDNFLDQLRQWNPVLLAVDEAHCISQWGHDFRPEYAALGHLRQMLPSVPFMAL
TATADDTTRRDIERLLGLNDPLIQVSSFDRPNIRYMLMEKFKPLDQLLRYVQEQRGKSGI
IYCNSRAKVEDTAARLQSRGFSAAAYHAGLDNELRARVQEQFQRDDLQIVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPAGPL
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNCDICLDPPRQYDGLQDAQKAL
SAIYRVNQRFGMGYVVEVLRGANNQRIREFGHDKLPVYGIGREQSHEHWVSVIRQLIHMG
FATQNIAQHSALQLTEAARPLLRGEVPLMLAVPRMVALKPKVMQKAAVGNYDRKLFAKLR
KLRKAIADEENIPPYVVFNDATLIEMAEQMPLSPGEMLSVNGVGTRKLERFGQEFMALIR
AHVDGDEE
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcaggcggaagtattgaatcaggaatcgctggctaaacaggtcttgcaagagacc
ttcggctaccagcaattccgcccgggccagcaggatattatcgacaccgtactgagcggc
cgcgactgcctggtggtgatgccgaccggcggtggaaaatccctgtgctatcaaattccg
gcgctggtgctgcaggggctgacggtggtggtttcgccgttgatctcactgatgaaagat
caggtcgaccagctacttgccaacggcgttgcggcggcgtgcctgaactctacccaaagc
cgtgagcagcagtttgacgtgatcaacggctgtcgcaacggccagatccgtctgctttat
atcgcgcccgagcgcctgatgctcgacaacttccttgaccagttgcgccagtggaacccg
gtgctgctggccgttgacgaagcgcactgtatttcccagtggggtcacgatttccgcccg
gaatacgccgcgcttggtcacctgcgccagatgctgccgtccgtgccttttatggcgttg
accgcgacggctgatgacaccacgcgccgcgatatcgaacgtctgctgggcttaaacgat
ccgctgatccaggtcagcagcttcgaccgtccgaacatccgctatatgctgatggaaaaa
tttaaaccgctcgatcagttgctgcgttacgtacaggagcagcgtggtaaatccggcatt
atttactgcaacagccgcgccaaggtggaagacactgccgcgcgtctgcaaagtcgtggg
ttcagcgcggcggcttatcatgccgggctggataacgagctgcgcgcgcgggtgcaggag
cagttccagcgcgacgatttacaaatcgtggtggcaaccgtggcgtttggcatgggcatc
aacaagccgaacgtacgtttcgtggtgcatttcgacatcccgcgcaatatcgaatcctat
tatcaggagacgggccgcgccgggcgtgacggcctgcctgcggaagcgatgctgttttac
gatccggcggatatggcgtggctgcgccgttgtctggaggagaaaccggcagggccattg
caggatattgagcggcacaagctcaatgcgatgggcgcatttgctgaagcgcaaacctgc
cgtcgtctggtgctgctcaactatttcggcgaagggcggcaggagccctgcggcaactgc
gacatttgcctcgatccgccgcgccagtacgatggtttgcaggacgcgcaaaaagcgttg
tcggccatctatcgcgtcaatcagcgtttcggtatgggttatgtagtggaagtgctgcgc
ggtgcgaacaatcagcgcatccgcgaattcggtcacgacaaattgccggtgtacggcatt
ggccgcgagcagagccatgaacactgggtgagcgtgatccgccagcttatccatatggga
tttgccacccagaatattgcccagcattctgcgcttcagttaacggaagcggcgcgtccg
ctgctacgtggtgaagtaccgctgatgctggcggtgccgcgaatggtagcgctgaagcca
aaagtgatgcagaaagccgccgttggcaattacgatcgcaagctgttcgccaagctgcgt
aaattgcgaaaagcgattgccgacgaagagaatatcccgccttatgtggtgtttaacgat
gcaacgctgattgagatggccgaacagatgccgctttcgccgggggaaatgctcagcgta
aacggcgtgggaacgcgcaaacttgagcgtttcggccaggaatttatggcgcttattcgc
gcacatgtcgatggcgacgaagagtag
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