Kocuria rhizophila: KRH_06020
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Entry
KRH_06020 CDS
T00701
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
krh
Kocuria rhizophila
Pathway
krh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
krh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KRH_06020 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
krh03021
]
KRH_06020 (rpoC)
03400 DNA repair and recombination proteins [BR:
krh03400
]
KRH_06020 (rpoC)
Enzymes [BR:
krh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KRH_06020 (rpoC)
Transcription machinery [BR:
krh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KRH_06020 (rpoC)
DNA repair and recombination proteins [BR:
krh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KRH_06020 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
NOG1_N
DUF4407
Motif
Other DBs
NCBI-ProteinID:
BAG28949
UniProt:
B2GIK0
LinkDB
All DBs
Position
659989..663879
Genome browser
AA seq
1296 aa
AA seq
DB search
MSNDSSLGLMQIGLATADQIRGWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRYKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITSVDEQARHDDLPNLQAAIDREKKQLEDTRDADINAIARDLEND
LARVEEEGGKAAEKRKLRDSADRQMANVRKRADREIDYLEKVWDRFKNLKVNDLEGDEAL
YRQMVDRYGMYFEGSMGAESIKKRLETFDLAAEAEALRETIATGKGQRKTRALKRLKVVN
AFLTTDNSPLGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERYR
PQVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCGAFNADFDGDQ
MAVHLPLSPEAQAEARVLMLSSNNILKPSDGKPIALPSQDMIIGLYHLTTVREGWAGEGN
TYSSVAEAIMANDSGELHLNAKCKIRLEDFVPYAGWEAPEGWEPGQPAVVETTLGRVLFN
ETLPEDYPWDENVADKKHLSALVNDLAERYPMTRVAKTLDNLKDAGFHWASRSGVTVAIS
DIATPPEKPAIMEGYEAQAARIQGQYDKGLIDDDERRSELIDIWSKATDEVAQAMRDNLE
PTNTINRMVSSGARGNWMQVRQIAGIRGLVANPKGEIMPRPIKSSYREGLSVLEYFIATH
GARKGLADTALRTANSGYLTRRLVDVSQDVIVRESDCQTVRGLTLPLSDITDTGVRTLSE
DVENTVHGRVLASAVADENGEVLAEAGADMSDAMIEKLYAAGVDQVRVRSVLTCESAVGV
CAACYGRSLATNQLVDIGEAVGIVAAQSIGEPGTQLTMRTFHTGGVASSDGDITQGLPRI
QELFEARTPKGVAPISEVAGRIRIEDTDKSLKIVVVPDNGDEEFAYPVLRRAKLLVADGD
HVDVGQQLVTGAVDPKEVLRIRGPREAQKHLVDEVQGVYRSQGVGIHDKHVEVIVRQMLR
RVTIIESGDTSLLPGELVDNVRFLEANRGAVAEGKRPAAGRPELMGITKASLATDSWLSA
ASFQETTRVLTQAAMEGKSDPLLGLKENVIIGKLIPAGTGLDRYNSVDVEPTEEAKAQMF
TDPSAFADFSYAEENAGGLGSEFQAIPLDDYDFGGN
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacgattcttcactgggtctcatgcagatcggcctggccaccgcggatcagatc
cgcggctggtcctacggcgaggtcaagaagccggaaaccatcaactaccgcacgctcaag
cccgagaaggacggcttgttctgcgagaagatcttcggtcccacccgggactgggagtgc
tactgcggcaagtacaagcgtgtgcgctacaagggcatcatctgtgagcgctgcggcgtg
gaggtcacgcgtgccaaggtgcgccgtgagcgcatgggccacatcgagctcgccgctccc
gtgacccacatctggtacttcaagggcgtgccctcacgcttgggctacctgctggacctc
gcgcccaaggacctcgagaaggtcatctacttcgcggcgtacatgatcacgtccgtggac
gagcaggcccgccacgacgacctgcccaacctgcaggccgcgatcgaccgcgagaagaag
cagctcgaggacacccgggacgcggacatcaacgcgatcgcccgcgacctcgagaacgac
ctcgcgcgcgtcgaggaggagggcggcaaggccgccgagaagcgcaagctgcgcgactcc
gcggaccgccagatggccaacgtgcgcaagcgcgcggaccgcgagatcgactacctggag
aaggtctgggaccgcttcaagaacctcaaggtcaacgacctcgagggcgacgaggccctg
taccgccagatggtggaccgctacggcatgtacttcgagggctccatgggtgctgagtcc
atcaagaagcgcctggagaccttcgacctcgcggccgaagccgaggcgctgcgcgagacc
atcgccacgggcaagggccagcgcaagacccgcgccctgaagcgcctcaaagtggtcaac
gcgttcctcaccacggacaactcgccgctgggcatggtcctggacgccgttccggtgatc
ccgccggagctgcgccccatggtgcagctggacggtgggcgcttcgcgacctccgacctc
aacgacctctaccgtcgtgtgatcaaccgcaacaaccgtctgaagcgcctgctggacctc
ggtgcccccgagatcatcgtgaacaacgagaagcgcatgctgcaggaggccgtggactcg
ctgttcgacaacggccgccgtggccgccccgtcacgggtccgggcaaccgtgccctgaag
tcgctgtccgacatgctcaagggcaagcagggccgcttccgccagaacctgctgggcaag
cgcgtggactactccggccgttccgtgatcgtggtgggcccgcagctgaagctgcaccag
tgcggtctgcccaagcagatggcgctggagctgttcaagccgttcgtgatgaagcgcctg
gtggacctgaaccacgcgcagaacatcaagtccgccaagcggatggtggagcgctaccgt
ccgcaggtgtgggacgtgctggaagaggtcatcaccgagcaccccgtgctgctgaaccgt
gcgcccaccctgcaccgtctgggcatccaggcgttcgagccgcagctcgtggagggcaag
gccatccagctgcacccgctcgtgtgcggtgcgttcaacgcggacttcgacggtgaccag
atggcggtgcacctgccgctgtccccggaggcccaggccgaggcgcgcgtgctgatgctg
tcctcgaacaacatcctcaagccctcggacggcaagccgatcgccctgccctcgcaggac
atgatcatcggcctgtaccacctcaccaccgtgcgtgagggctgggccggggagggcaac
acctactcctccgtggccgaggccatcatggccaacgactccggtgagctgcacctcaac
gccaagtgcaagatccgcctcgaggacttcgtgccgtacgccggctgggaggcccccgag
ggttgggagccgggtcagcctgccgtcgtggagaccaccctgggacgcgtgctgttcaac
gagacgctgcccgaggactacccgtgggacgagaacgtcgcggacaagaagcacctgtcc
gcgctcgtgaacgacctcgcggagcgctacccgatgacccgcgtggccaagacgctggac
aacctcaaggacgccggcttccactgggcctcgcgctcgggtgtcacggtggccatctcg
gacatcgcgaccccgccggagaagcccgccatcatggagggctacgaggcgcaggccgcg
cgcatccagggtcagtacgacaagggtctgatcgacgacgacgagcgccgctcggagctc
atcgacatctggtccaaggccaccgacgaggtcgcgcaggccatgcgggacaacctcgag
cccaccaacaccatcaaccgcatggtgtcctcgggtgcacgaggcaactggatgcaggtc
cgccagatcgccggcatccgcggcctggtggccaacccgaagggcgagatcatgccccgc
ccgatcaagtcctcctaccgtgagggcctgtcggtgctggagtacttcatcgccacccac
ggtgcccgcaagggcctcgcggacaccgcgctgcgtaccgccaactcgggctacctgacc
cgtcgtctggtggacgtctcgcaggacgtgatcgtgcgcgagtccgactgccagacggtg
cgcgggctcacgctgccgctgtccgacatcacggacacgggtgtgcgcaccctgtccgag
gacgtggagaacacggtgcacggccgcgtgctggccagcgccgtggcggacgagaacggc
gaggtgctggccgaggccggcgcggacatgtccgacgccatgatcgagaagctctacgcg
gcgggtgtggaccaggtgcgcgtgcgctcggtgctgacctgcgagtccgcggtgggcgtg
tgcgcggcgtgctacggccgctcgctggccaccaaccagctggtggacatcggcgaggcc
gtgggcatcgtggccgcgcagtccatcggcgagcccggtacccagctgaccatgcgcacg
ttccacaccggtggtgtggcgtcctcggacggtgacatcacgcagggtctgccccgtatc
caggagctcttcgaggcccgcacccccaagggtgtggccccgatctccgaggtggccggc
cggatccgcatcgaggacacggacaagtccctcaagatcgtggtggtcccggacaacggc
gacgaggagttcgcctacccggtgctgcgtcgcgccaagctgctcgtggccgacggcgac
cacgtggacgtgggccagcagctggtcaccggcgcggtggaccccaaggaggtgctgcgc
atccgcggtccccgcgaggcgcagaagcacctcgtggacgaggtccagggcgtctaccgc
tcgcagggcgtgggcatccacgacaagcacgtggaggtcatcgtccggcagatgctgcgt
cgcgtgaccatcatcgagtccggtgacacctcgctgctgccgggtgagctggtggacaac
gtgcgcttcctcgaggccaaccgcggtgcggtggccgagggcaagcgtcccgccgcaggc
cgtccggagctcatgggcatcaccaaggcctcgctggccacggactcgtggctgtccgcc
gcgtccttccaggagaccacgcgtgtgctcacgcaggccgccatggagggcaagtcggat
ccgctgctgggcctgaaggagaacgtgatcatcggcaagctcatccccgccggcaccggt
ctggaccggtacaacagcgtggacgtggagcccaccgaggaggcgaaggcccagatgttc
acggatccctccgcgttcgccgacttcagctacgcagaggagaacgccggggggctcggt
tccgagttccaggcgatcccgctcgacgactacgacttcggcggcaactga
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integrated database retrieval system
