Kocuria rhizophila: KRH_09550
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Entry
KRH_09550 CDS
T00701
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
krh
Kocuria rhizophila
Brite
KEGG Orthology (KO) [BR:
krh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
krh03019
]
KRH_09550 (hrpA)
Enzymes [BR:
krh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KRH_09550 (hrpA)
Messenger RNA biogenesis [BR:
krh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KRH_09550 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
nSTAND3
AAA_25
PhoH
T2SSE
AAA_30
ABC_tran
NACHT
AAA_23
Myosin_head
Motif
Other DBs
NCBI-ProteinID:
BAG29302
UniProt:
B2GLW1
LinkDB
All DBs
Position
complement(1036247..1040503)
Genome browser
AA seq
1418 aa
AA seq
DB search
MDITCRSVEKETQLTCRDTCACRPCGNHGACVCRGRPVDCTIVMTEPLATPRIVYPDNLP
VSARREDIMSAIRENQVVVVAGETGSGKTTQLPKMCLELGLGERGLIGHTQPRRIAARSV
AERIAHELGERVGATVGYQVRFTSEVGRDSRIKLMTDGIMLAEISHDPTLSRYNAIIIDE
AHERSLNIDFLLGYLRRLLPQRPDLKVVITSATIDPQRFAEHFAQPDPEHPEAEPVPAPV
IEVSGRTYPVEIRYRPLTQERSGDGGPDEEDTGDGLADEDRDPIDAVCDAVVELSREPRG
DILVFFAGEREIRDAQDALQKVIDSHRSLAGTQILPLFGRLSMAEQNRVFSQSSHRRIVL
ATNVAETSLTVPGIKYVVDPGTARISRYSARTKVQRLPIERISQASAKQRSGRSGRTSDG
VCIRLYSEEDFESRPEFTDPEILRTNLAAVILQMISVGVVREPGDILDFPFVQKPDPRAV
KDGVVLLQELGALRGPGASAEHDDAASPPARRSRGGRRGRGRKGGARGPLTRTGEILAAL
PVDPRLGRMIVEADRRGCAREVLVLTAALTVQDPRERPLEKRQAADEFHARFKDKTSDFL
SYGLLWQYLQEQQAELSSSQFRKLCRREYLNFLRIREWQDLYAQLRQIARQSGIDVGGSR
EIDVAAHQDDVHKSLLSGLLSNIGVRDERSREYRGARGTRFAIFPGSALFKKSPDWIVSA
ELVETSRLWARTNAAIQPEWAEEIAPSLVKRSYSEPHWSRSRGAVMASEKVTLYGLPLVS
ERPVLFSSIDPELSRELFIRHALVEGDWQTRHTFVKRNRKALAEVEELENRMRRKDLRVD
DQVLFDFYDARVPANVVSQRHFDAWWKKARHQDEHLLDLTPEDLIAPEAPALDTDSFPRS
WHVHSPEGDLSLDLDYEFAPGTDTADGVTVRIPVLFLDRLAPEQFEWHIPGLRVELVTAL
IKSLPKAVRRNFVPAPDTAAAAVRRLDEEFDPPSGSLLEALATVLRRMRGHPVQASDFHP
ETLPPHLRMRFEVRDARSAVLGRGDDLTELKQRLRPRVREALAQSLGQAAAQLYDAAGTS
ASAASGGDDDAAPGSRRGRRSGRDDRKGRGSARPDERAASSASLERTDLRAWPEPDPPRS
VETTVAGQTVTGYPTLVAVAPEKPGSTEPPRVDLRILSDPEEQRAAQRDGVIALLQRVLP
SVHRYVVDHLSQRERLIFTQNPHGSVEALIHDCTGAAIDRLVPHDPPFTRAEFDRLAEHV
RAELIDTVFDVTALVTTALTEATTVRKRLKKPGSLGAVPAFTDMAEQVDRLIHPGFVART
GWQALQHLPRYLAGVNARLDKLSGHLQRDAVAMQTVHELEAAYRAALDTVPPTVPTPAAL
REIRWDLEELRVSFFAQELGTAHTVSEKRLRKKLRELG
NT seq
4257 nt
NT seq
+upstream
nt +downstream
nt
gtggatattacctgccgatcggtcgaaaaagagacgcagctcacatgtagggacacgtgc
gcgtgtcgcccgtgcggcaaccacggcgcctgcgtgtgtcgggggcggcccgtagactgc
acgattgtcatgactgagcccctcgccacgccccgcatcgtgtacccggacaacctcccc
gtctccgcgcgccgggaggacatcatgtccgccatccgggagaaccaggtggtggtggtc
gccggtgagaccggctccggcaagaccacccagctgcccaagatgtgcctcgagctgggc
ctgggcgagcgcggtctgatcgggcacacccagccgcgcaggatcgccgcgcgctcggtc
gcggagcggatcgcccacgagctcggcgagcgcgtgggtgccaccgtgggctaccaggtg
cggttcacgtccgaggtgggcagggactccaggatcaagctcatgacggacggcatcatg
ctggccgagatcagccacgaccccacgctctcgcgctacaacgcgatcatcatcgacgag
gcccacgagcgctcgctcaacatcgacttcctgctgggctacctccgccggctgcttccc
cagcggccggacctgaaggtggtcatcacctccgcgaccatcgacccccagcgcttcgcg
gagcacttcgcgcagccggaccccgagcacccggaggccgagcccgtgccggcgccggtc
atcgaggtctccgggcgcacctacccggtggagatccgctaccgcccgctcacgcaggag
cgcagcggtgacggcgggccggacgaggaggacaccggggacggcctcgcggacgaggac
cgggacccgatcgacgccgtgtgcgacgccgtggtggagctctcccgggaaccgcgcggg
gacatcctcgtgttcttcgcgggtgagcgcgagatccgcgacgcgcaggacgcgctgcag
aaggtcatcgactcccaccgctccctggccgggacccagatcctccccctgttcgggcgg
ctgtccatggcggagcagaaccgggtgttctcgcagtcctcccaccgccgcatcgtgctg
gccaccaacgtggcggagacgtccctgacggtccccggcatcaagtacgtggtggatccc
ggcaccgctcgcatctcgcggtactcggcgcgcaccaaggtccagcgcctgccgatcgag
cggatctcgcaggcgtcggccaagcagcggtcgggccgctccgggcgcacctcggacggt
gtgtgcatccggctgtactcggaggaggacttcgagtcccgccccgagttcacggacccc
gagatcctgcgcaccaacctggccgcggtgatcctgcagatgatctccgtgggcgtggtc
cgggagcccggcgacatcctggacttcccgttcgtgcagaagccggacccgcgcgccgtc
aaggacggcgtggtgctgctgcaggagctcggtgccctgcgcgggccgggcgcctctgcg
gagcacgacgacgcggcgtcgccgcccgcgcgccggtcccgtggcggacgccggggccgt
ggccggaagggcggagcccgcggcccgctgacccgcaccggtgagatcctcgcggccctg
cccgtggacccgcgtctgggtcggatgatcgtggaggcggaccgccgcggctgcgcgcgc
gaggtgctcgtgctcacggcggccctgaccgtccaggacccgcgggagcgtccactcgag
aagcgccaggccgctgacgagttccacgcccggttcaaggacaagaccagcgacttcctc
tcctacgggctgctgtggcagtacctgcaggagcagcaggccgagctgtcctcctcgcag
ttccgcaagctgtgccggcgcgagtacctgaacttcctgcgcatccgcgagtggcaggac
ctctacgcgcagctgcgccagatcgcccggcagtcgggcatcgacgtgggcggttcccgg
gagatcgacgtggccgcgcaccaggacgacgttcacaagtccctgctctcggggctgctc
agcaacatcggcgtgcgggacgagcgcagccgcgagtaccggggcgcgcgcggcacgcgg
ttcgcgatcttcccgggctccgcactgttcaagaagtccccggactggatcgtctccgcc
gagctggtggagacctcccggctgtgggcccgcaccaacgcggcgatccagcccgagtgg
gcggaggagatcgcgccgtcgctggtgaagcgctcctactccgaaccgcactggtcccgc
tcgcgcggtgccgtgatggcctccgagaaggtcacgctctacgggctgccgctggtcagc
gagcgccccgtgctgttctcctcgatcgaccccgagctctcccgggagctgttcatccgc
cacgccctggtggagggcgactggcagacgcgccacaccttcgtcaagcgcaaccgcaag
gcgctcgcggaggtcgaggagctcgagaaccggatgcgccgcaaggacctgcgcgtggac
gaccaggtcttgttcgacttctacgacgcccgggtccccgcgaacgtggtctcgcagcgc
cacttcgacgcgtggtggaagaaggcccgccaccaggacgagcacctgctggacctcacc
cccgaggacctcatcgcgcccgaggccccggccctggacacggactcgttcccgcgctcg
tggcacgtgcactcccccgagggggacctcagcctggacctggactacgagttcgccccg
ggcacggacaccgcggacggtgtcacggtgcggatccccgtgctgttcctggaccggctc
gcccccgagcagttcgagtggcacattcccggcctgcgggtggagctggtcaccgcgctg
atcaagtccctgcccaaggccgtgcgccgcaacttcgtgccggccccggacaccgcggcc
gcggccgtgcgccggctggacgaggagttcgacccgccctccggctcgctgctcgaggcc
ctcgccacggtgctgcgccggatgcgcgggcaccccgtgcaggcctccgacttccacccc
gagacgctgcccccgcacctgcggatgcgcttcgaggtccgggacgcccgcagcgcggtg
ctcggccgcggggacgacctcaccgagctcaagcagcggttgcgtccgcgcgtgcgcgag
gccctcgcgcagtcgctggggcaggccgccgcccagctctacgacgccgcgggcacctcc
gcgagcgcggcctccggcggggacgacgacgccgcgcccggttcgcggcgcggccggcgc
tccggtcgcgacgaccgcaagggccggggcagtgcgcgcccggacgagcgggcggcgtcg
agcgcgtccctggaacgcaccgacctgcgcgcgtggcccgagccggatccgccccgcagc
gtggagaccaccgtggccggccagacggtcaccggctaccccacgctcgtggccgtggcg
ccggagaaaccggggagcacggagcccccgcgcgtggacctgcggatcctgagcgacccc
gaggagcagcgcgcggcccagcgcgacggcgtgatcgcgctgctgcagcgcgtgctgccc
tccgtgcaccgctacgtggtggaccacctcagccagcgcgagcggctgatcttcacccag
aacccccacggctccgtggaggccctgatccacgactgcaccggtgcggcgatcgacagg
ctggtgccccacgaccccccgttcacccgggcggagttcgaccggctggccgagcacgtg
cgggcggagctcatcgacacggtcttcgacgtcacggcgctcgtgaccaccgcgctcacg
gaggcgaccacggtgcgcaaacggctgaagaaacccggatccctgggcgcggtgcccgcg
ttcacggacatggcggagcaggtggaccggctcatccaccccggtttcgtggcacgcacc
gggtggcaggcccttcagcacctgccccgctacctggccggggtcaacgcccggttggac
aagctctccggtcacctgcagcgcgacgcggtggccatgcagacggttcacgaactcgag
gcagcgtaccgtgccgccctggacaccgtgccgcccacggtgcccacccccgcggcgctc
cgggagatccgctgggacctggaggagctgcgggtctcgttcttcgcgcaggaactgggc
accgcgcacaccgtctcggagaagcggctgcggaagaagctgcgcgagctgggctga
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