Kocuria rhizophila: KRH_11280
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Entry
KRH_11280 CDS
T00701
Name
(GenBank) putative ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
krh
Kocuria rhizophila
Pathway
krh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
krh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KRH_11280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
krh03019
]
KRH_11280
03009 Ribosome biogenesis [BR:
krh03009
]
KRH_11280
Enzymes [BR:
krh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KRH_11280
Messenger RNA biogenesis [BR:
krh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KRH_11280
Ribosome biogenesis [BR:
krh03009
]
Prokaryotic type
rRNA processing factors
KRH_11280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
NT5C
Motif
Other DBs
NCBI-ProteinID:
BAG29475
UniProt:
B2GGD5
LinkDB
All DBs
Position
1242604..1246041
Genome browser
AA seq
1145 aa
AA seq
DB search
MEPEQDTSALTPGSATGETPTASPQDDAAAQPAAAQGTEPAAQDVQDPQGTRTSPTTDGD
APADTAPASDPAATSGEAAATDAEAPHATSEEEATAAPVDGTSDAIAIAAAIDAGELPTA
PVTPPEESTTAPDTAAAAAAQSAGSSSDEAAASSAPEPQNAASEDGAAADSTDSPAAEDA
PAAEGTEPPTQQDFGAFGPGASLLFRAPDPDEIRRAAEAQKARLREAAQEREAARGDRDE
DDDASVSSKRRRRRRRGDEDMELVDDSDGSVTRVRAPRGASEGTSSDEVTGVKGSTRLEA
KRQRRRESRQFGRRRHVITEAEFLARRESVERTMLVRQKEDRIQIGVLEDGILAEHFVSH
TTQDSLIGNVYVGKVQNVLPSMEAAFVDIGRGRNAVLYAGEVDWDAAEMGHKPRKIENAL
KSGDTVLVQVTKDPVGHKGARLTSQVSLPGRYLVYVPGGSMTGISRKLPDVERQRLKKIL
KDRLPEGAGVIVRTAAEGASETELTNDINRLRSQWEQIQEKAGSTKTLAPELLYAEPDLT
IKTVRDVFNEDFTAMVVQGEQAWDNIEAYVTYVAPDLLDRLQRWTEDEDLFEHMRVEEQI
QKALERKVFLPSGGSLVIDRTEAMTVVDVNTGKFTGSGGNLEETVTKNNLEAAEEIVRQL
RLRDIGGIIVVDFIDMVLESNRDLVLRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRMGT
GLLEVFSEPCEECAGRGVLVHDHPLKGRSTASAPDHRGNRNDRKRSRQKQQHQPQEKQPS
PARSKSPDEQQARDEAARTAFATIAAASSHEDDAAQHGSRDAAASSGSASGAADSARDHQ
AAGGPGDESHGESEGGRRRKKRRGKRSRGRTQQGEDGGSSQETSREDHTQGQDGGAASQL
TIGGEVVELPQGHQDRGTAQESLTLDSLSAAFSGEDTSGEETSGGDRSGSGSRSGGAGRQ
RRGRRVATAPGTATGARGSAEDADRSSDSQGGKSGAGQDSDTQRDQSGGGRSRNGGAGNR
QSGSGWSEDDKTGRDQSGRDQSGSSRSGGAGTAPSAAGQNAPGAAGQAAPSTPARRRRGS
RRAVAPAAAPGTASVETREYEASAGAASRFTAEATAVRTAPSDGQPTIVGVGVKAQDITM
TPKAD
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atggaacctgaacaggacacctccgcactgacccccgggtccgccacgggtgagaccccc
accgcgtcgccgcaggacgacgccgccgcgcagcccgccgccgcacagggcaccgagccc
gccgcccaggacgtgcaggacccgcagggcacccgcacctcgccgaccacggacggggac
gcaccggccgacacggcccccgcgtcggacccggccgccacgagcggcgaggcggcggcc
acggacgccgaggcaccgcacgccacctccgaggaggaggccaccgcggccccggtcgac
ggcacgagcgacgccatcgccatcgcggccgccatcgacgccggagagctccccacggcg
cccgtcacgccgccggaggagtccaccacggcaccggacaccgcggccgcggccgccgcg
cagtcagcgggcagcagctcggacgaggccgccgcctcgtcggcccccgagccgcagaac
gccgcgtccgaggacggcgccgccgccgacagcaccgactcacccgccgccgaggacgcc
ccggcggcggagggcaccgagccccccacgcagcaggacttcggggccttcggcccgggc
gcgtccctgctgttccgggcgccggacccggacgagatccgccgtgccgccgaggcccag
aaggcccggctgcgcgaggccgcccaggagcgggaggccgcccgcggggaccgcgacgag
gacgacgacgcgagcgtgtcgagcaagcggcgccgacggcgtcgtcgtggtgacgaggac
atggagctcgtggacgactccgacggctccgtgacccgggtgcgcgccccgcgcggtgcg
tccgagggcaccagcagcgacgaggtcaccggggtcaagggctccacgcgcctcgaggcc
aagcgccagcgccgccgcgagtcccgccagttcggccgccgccgccacgtgatcaccgag
gccgagttcctggcgcgccgcgagtccgtggagcgcaccatgctggtccgccagaaagag
gaccggatccagatcggcgtgctcgaggacggcatcctcgcggagcacttcgtctcccac
accacgcaggactcactgatcggcaacgtctacgtgggcaaggtgcagaacgtgctgccg
tccatggaggccgcgttcgtggacatcggccgcgggcgcaacgccgtgctctacgccggc
gaggtggactgggacgccgccgagatggggcacaagccccgcaagatcgagaacgccctg
aagtccggggacaccgtgctcgtgcaggtcaccaaggaccccgtgggccacaagggcgcc
cggctcaccagccaggtctccctgcccgggcgctacctcgtgtacgtgcccggcggctcc
atgaccgggatctcccgcaagctcccggacgtcgagcgccagcggctcaagaagatcctc
aaggaccggctgcccgagggcgcgggcgtgatcgtgcgcaccgccgccgagggggcgtcc
gagaccgagctgaccaacgacatcaaccggctgcgctcgcagtgggagcagatccaggag
aaggccggctccaccaagaccctcgccccggagctgctctacgccgagccggacctcacc
atcaagaccgtccgggacgtgttcaacgaggacttcaccgccatggtggtccagggcgag
caggcgtgggacaacatcgaggcctacgtgacctacgtggccccggacctgctggaccgg
ctgcagcgctggaccgaggacgaggacctcttcgagcacatgcgcgtggaggagcagatc
cagaaggcgctggagcgcaaggtgttcctgccctccggcggctcgctcgtgatcgaccgc
accgaggccatgaccgtggtggacgtcaacacgggcaagttcaccggttccggcggcaac
ctcgaggagaccgtcaccaagaacaacctcgaggccgccgaggagatcgtgcgccagctg
cggctgcgggacatcggcgggatcatcgtggtggacttcatcgacatggtcctggagtcc
aaccgggacctcgtgctgcgccggctcgtggagtgcctgggccgcgaccgcaccaagcac
caggtggcggaggtgacctccctgggtctcgtgcagatgacgcgcaagcgcatgggcacg
gggctgctggaggtgttctccgagccgtgcgaggagtgcgccgggcgcggcgtgctggtc
cacgaccacccgctcaagggccgctccaccgcgtccgccccggaccaccgcggcaaccgc
aacgaccgcaagcgctcgcgccagaagcagcagcaccagccgcaggaaaagcagccctcg
cccgcgcgctccaagagcccggacgagcagcaggcccgggacgaggccgcgcgcaccgcg
ttcgccaccatcgccgcggcttcctcgcacgaggacgacgccgcccagcacggttcccgg
gacgcggccgcgtcctcgggcagcgcgtccggtgccgcggactccgcgcgagaccaccag
gcggcgggaggccccggggacgagagccacggcgagtccgagggcggacgccgtcgcaag
aagcgccggggcaagcgcagccgtggccgcacccagcagggtgaggatggcggttcgtcg
caggagacctcccgcgaggaccacacccagggccaggacggcggcgccgcctcgcagctg
accatcggcggcgaggtcgtcgagctcccgcagggccaccaggaccgtggcacggcacag
gagtccctaacccttgactcgctctccgcggcgttctctggtgaggacacttcgggcgag
gagacctccggcggcgaccgttccggatccgggtcccgttcgggtggtgcgggccgtcag
cgccgcggccgccgggtggccacggcccccggcaccgccacgggcgcgcgcggctccgcc
gaggacgccgaccgctcctcggactcccagggcggaaagtcaggggcggggcaggacagc
gacacccagcgggaccagtccggaggcggccggtccaggaacggcggggcgggcaaccgc
cagtccgggagcggttggtccgaggacgacaagaccggacgagaccagtccgggcgcgac
cagtccggcagcagccgctccggtggtgccgggaccgcgcccagcgcggccggtcagaac
gcaccgggtgccgcggggcaggccgccccgagcaccccggccaggcggcgtcgtggttca
cgccgtgcggtggcacccgccgccgcaccgggcaccgcgagcgtggagacgcgcgagtac
gaggcgtcggcgggggccgcgagccgtttcaccgccgaggccaccgcggtgcgcacggcg
ccctcggacgggcagccgaccatcgtgggggtgggcgtgaaggcccaggacatcaccatg
acccccaaggcggactga
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