Kocuria rhizophila: KRH_13780
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Entry
KRH_13780 CDS
T00701
Name
(GenBank) putative helicase
KO
K03727
ATP-dependent RNA helicase HelY [EC:
5.6.2.6
]
Organism
krh
Kocuria rhizophila
Brite
KEGG Orthology (KO) [BR:
krh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
krh03019
]
KRH_13780
Enzymes [BR:
krh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KRH_13780
Messenger RNA biogenesis [BR:
krh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KRH_13780
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
SH3_HelY
DEAD
ResIII
DEXQc_Suv3
Helicase_C
MTR4-like_stalk
MTR4_beta-barrel
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BAG29725
UniProt:
B2GIN2
LinkDB
All DBs
Position
complement(1553293..1556118)
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AA seq
941 aa
AA seq
DB search
MSSPAERYTAAKARAAHASTELAAFEHTLDFELDPFQTQGCRALEEGRGVLVAAPTGAGK
TVVGEFAIHLALQQGRKAFYTTPIKALSNQKFHEFSRRWGSDRVGLLTGDTSVNSEADVV
VMTTEVLRNMLYGGSATLDNLGFVVMDEVHYLADRFRGAVWEEVIIHLPEHVQLVSLSAT
VSNAEEFGAWLDDVRGSTDVVVSEHRPVPLWQHVQVGPQLMDLFVDDTTVEEAAQRHSDR
HREEPAVNPELLRLFRTQHPRGGRAGGRGPGHRGRRRGGRQQEPRTARQDRISRPHLLRR
LDAEAMLPAITFIFSRAGCDAAVAQCVAADLWLTTPQEQRTIKAFAAEATAHMSTADLAA
LNYEDWYHGLIRGVSAHHAGMLPVFKEVVEQLFSEGLIKAVFATETLALGINMPARSVVL
ERLDKFNGEARVDITPGEYTQLTGRAGRRGIDVEGHAVVLWRDGMNPQTVAGLASTRTYP
LNSSFRPTYNMSTNLIARYGAKRSRSILETSFAQFQADRSVVGIAKRVRSQEKTLQAYRE
AMSCHLGNFEEYARLRRELGAEEKSASRSRTARQRNDAAVALQDLLPGDVIEIPQGRNAG
WAVVLRADAHPFDPRPHILTVDGKLRRVGVNDLDGSLAPESRIRIPKNFSGKAPKERQDL
AATVRAALREHRPARTDSGGRGIRFDRGTSARDHRIEDLRRRLRTHPCHGCSDREQHARW
AERAWKLEKDTQGLRKQIAGRTGSIAATFDRVCAVLAHFAYLEQDESGQLRPTAAGEQLR
RLYGERDLLLALSLRDGFLDGLDAPGLAGVMTALVYQPRREDQGTRPRLPTAAMDAAVQT
LLENWSVLSAREAEHRLPLTAVPELGLVEAMHRWARGATLTRTLTGTDLAAGDFVRWAKQ
TIDVLDQLRGVHGLDPALRDTAHEAIEAVRRGVVEYSVFEQ
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcccccgccgaacggtacacggccgccaaggctcgcgcggcccacgcctccacc
gaactcgcggccttcgagcacaccctggacttcgagctggaccccttccagacccagggc
tgccgcgccctggaggagggccggggagtgctcgtggcggcccccacgggggcgggcaag
accgtggtgggggagttcgccatccacctggctctgcagcaggggaggaaggcgttctac
accacccccatcaaggcgctgagcaaccagaagttccacgagttctcccggcgctggggc
tccgaccgcgtgggcctgctcacgggggacacctccgtgaactccgaggcggacgtggtg
gtcatgaccaccgaggtgctgcgcaacatgctctacggcggctcggccaccctcgacaac
ctggggttcgtggtcatggacgaggtgcactacctcgcggaccgcttccgcggcgcggtg
tgggaagaggtgatcatccacctgcccgagcacgtgcagctggtgtccctgtccgccacg
gtgtccaacgcggaggagttcggtgcgtggctggacgacgtccgcggcagcacggacgtg
gtggtctccgagcaccgcccggtcccgctgtggcagcacgtgcaggtggggccgcagctg
atggacctgttcgtggacgacaccacggtggaggaggccgctcagcgccactcggacagg
caccgggaggagcccgcggtgaacccggagctgctgcggctcttccgcacccagcacccc
cgcggcggtcgcgccggtggccgcggccccgggcaccgcggacgacgccgcggcgggcgc
cagcaggagccgcgcaccgcacgccaggaccgcatctcccgcccgcacctgctgcgccgg
ctggacgcggaggccatgctgcccgcgatcactttcatcttctcccgcgcggggtgcgac
gccgcggtggcgcagtgcgtggccgcagacctgtggctcaccacaccgcaggagcagcgc
accatcaaggcgttcgccgcggaggccaccgcgcacatgtccacggcggacctcgcggcc
ctgaactacgaggactggtaccacgggctgatccgcggtgtctccgcccaccacgcgggc
atgctcccggtgttcaaggaggtcgtggaacagctgttctccgaggggctcatcaaggcg
gtcttcgccaccgagaccctcgcgctgggcatcaacatgcccgcccgctccgtggtgctc
gaacggctggacaagttcaacggcgaggcccgggtggacatcaccccgggggagtacacc
cagctcacgggccgcgcggggcggcgcgggatcgacgtcgagggccacgccgtggtgctg
tggcgggacgggatgaacccccagacggtggcggggctcgcgtccacccgcacgtacccg
ctgaactccagcttccgtcccacgtacaacatgtccaccaacctgatcgcccgctacggc
gccaagcgctcgcgctccatcctggagacctccttcgcgcagttccaggcggaccgctcg
gtggtggggatcgccaaacgggtgcgctcccaggagaagaccctgcaggcctaccgggag
gccatgtcctgccacctggggaacttcgaggagtacgcccggctgcgccgtgagctcggg
gcggaggagaagtccgccagcaggtcgcgcacggcgcgccagcgcaacgacgccgccgtg
gccctgcaggacctgctgcccggggacgtgatcgagatcccgcaggggcgcaacgccggt
tgggcggtggtgctcagggccgatgcccaccccttcgacccccgcccgcacatcctcacc
gtggacggcaagctgcgacgggtgggcgtcaacgacctcgacggctccctcgcgccggag
tccaggatccggatccccaagaacttctcgggcaaggccccgaaggagcgccaggacctc
gccgccaccgtgcgggccgcgctgcgcgagcaccgcccggcgcgcaccgactccggcggg
cggggcatccgcttcgaccgtggcacgtccgcgcgggaccaccggatcgaggacctgagg
cggcggctgcggacccacccgtgccacggctgctccgaccgcgagcagcacgcccgctgg
gccgagcgcgcgtggaagctggagaaggacacgcagggcctgcgcaagcagatcgcgggc
cgcacgggcagcatcgccgccaccttcgaccgcgtgtgcgcggtgctcgcgcacttcgcc
tacctcgagcaggacgagagcgggcagctgcggcccaccgctgcgggggagcagctgcgc
cgactctacggtgagcgggacctgctgctggccctctccctgcgcgacggcttcctcgac
gggctcgacgcccccgggctcgccggggtgatgaccgccctggtgtaccagccgcggcgc
gaggaccagggcacccggccccggctgcccaccgccgccatggacgccgcggtgcagacc
ctgctggagaactggtccgtgctctcggcccgcgaggccgagcaccggctgcccctcacg
gccgtgcccgagctcggcctcgtggaggccatgcaccgctgggcgcggggggccacgctg
acccgcacgctcacgggcacggacctcgcggccggggacttcgtgcgctgggccaagcag
accattgacgtcctggaccagctgcgcggcgtgcacgggctggaccccgccctgcgggac
acggcccacgaggccatcgaggccgtgcgccgcggcgtggtcgagtacagcgtcttcgaa
cagtag
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