Kribbella sp. CA-293567: OX958_06075
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Entry
OX958_06075 CDS
T10137
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
kri Kribbella sp. CA-293567
Pathway
kri03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
kri00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OX958_06075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kri03021
]
OX958_06075
03400 DNA repair and recombination proteins [BR:
kri03400
]
OX958_06075
Enzymes [BR:
kri01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OX958_06075
Transcription machinery [BR:
kri03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OX958_06075
DNA repair and recombination proteins [BR:
kri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OX958_06075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
YlqD
Motif
Other DBs
NCBI-ProteinID:
WBQ06355
LinkDB
All DBs
Position
1260546..1264397
Genome browser
AA seq
1283 aa
AA seq
DB search
MNFFDELRIGLATADEIRQWSHGEVKKPETINYRTLKPERDGLFCEKIFGPTRDWECYCG
KYKRVRFKGIICERCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDLAPK
DLEKVIYFAAYMITDVDEDARHRDLSSLEGRTDVERKQLEGRRDNDIETRMKKLEEDLAQ
LEAEGAKADVRRKVKEGAEREVKQLRDRAQREIDRLDEVWSRFKSLKVQDLEGDEILYRA
MKERFGKYFEGAMGAAAIQRRLQTFDLKAEAASLRETIKTGKGQRKTRALKRLKVVTAFL
ATNNSPMGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAP
EIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVD
YSGRSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQRAQV
WDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLIEGKAIQIHPLVCSAFNADFDGDQMAV
HLPLSAEAQAEARILMLSTNNILKPADGRPVTMPTQDMIIGIYFLTMLKEGELGEGRAFS
SLAEALMAFDRKELSLQAKITLRLDQAGAPAGSAERPNGGFSLETTLGRALFNEALPSDY
TFVDAEVGKKQLGSIVNDLAERYSKVQVAYCLDALKDLGFRWATRSGVTVSIDDFSTPPS
KPEIMARYEAQAEKVQKQFERGLITSSERRQELIEIWTGANAEVGKAMEENFAKANPIWM
MVHSGARGNMMQIRQIAGMRGLVANPKGEIIARPIKSNFREGLSVVEYFIATHGARKGLA
DTALRTADSGYLTRRLVDVSQDVIIREEDCGTERGLPKLIGEPGPDGKVVHAENVETSAY
ARTLATDTFDAKGALVLAAGSDLGDVSIAALVAAGIEQVKVRSVLTCDAKTGTCAKCYGR
SLATGKPVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITHGLPRVVELFEARQP
KGKAPIGEAAGRIAIEDTDKTRKLVLTPDDGSEEVAYPVSKRARLLIEDGQQVEVGQQLT
QGTPDPQEVLRILGIRKAQEHLVDEVQAVYRSQGVAIHDKHIEIIVRQMLRRVTVIESGE
ANLLPGELADRLLFEAENRRVVAEGGTPASGRPVLMGITKASLATESWLSAASFQETTRV
LTEAAIHGKSDSLVGLKENVIIGKLIPAGTGMDRYRNIRVEPTEEAKAAMYSMVGYESYD
YDFGPSAGQSVPLDDFDLGSYQK
NT seq
3852 nt
NT seq
+upstream
nt +downstream
nt
gtgaacttcttcgacgagcttcggatcggcctggcgaccgcggatgagatccgccagtgg
tcgcacggcgaggtcaagaagcccgagacgatcaactaccggacgctcaagcccgagcgt
gacggtctgttctgcgagaagatcttcggtcccacccgggactgggagtgctactgcggt
aagtacaagcgggttcgcttcaagggcatcatctgtgagcggtgtggcgtcgaggtcacc
cgctccaaggtgcgccgcgagcggatgggccacatcgagctggccgcgccggtcacccac
atctggtacttcaagggtgtcccgtcgcgactcggctacctgctcgacctcgccccgaag
gacctcgagaaggtcatctacttcgcggcgtacatgatcaccgacgtcgacgaggacgcg
cggcaccgcgacctctcgtcgctggagggccggaccgatgtcgagcgcaagcagctcgag
ggccggcgcgacaacgacatcgagacccggatgaagaagctcgaggaggacctcgcccag
ctcgaggccgagggcgcgaaggccgacgttcgccgcaaggtgaaggaaggcgcggagcgt
gaggtcaagcagctgcgtgaccgtgcgcagcgcgagatcgaccgcctcgacgaggtctgg
agccggttcaagagcctcaaggtccaggacctcgaaggcgacgagatcctgtaccgcgcc
atgaaggagcggttcggcaagtacttcgagggcgcgatgggtgccgccgcgatccagcgg
cgcctgcagaccttcgacctgaaggcggaggcggccagcctgcgcgagacgatcaagacc
ggcaagggccagcgcaagacgcgggcactgaagcggctcaaggtcgtcaccgcgttcctg
gccaccaacaacagcccgatgggcatggtgctcgactgcgttccggtgatcccgccggac
ctgcggccgatggtccagctcgacggtggccggttcgccacctccgacctgaacgacctg
taccgccgggtgatcaaccgcaacaaccggctcaagcgtctgctcgacctgggcgcgccg
gagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgcactgttcgac
aacggccgtcgtggccgtccggtcaccggcccgggcaaccggccgctgaagtcgctgtcc
gacatgctcaagggcaagcagggccggttccgtcagaacctgctcggcaagcgcgtcgac
tactcgggccgttccgtcatcgtggtcggtccgcagctgaagctgcaccagtgcggtctg
ccgaaggcgatggcgctggagctgttcaagccgttcgtgatgaagcggctggtcgacctc
aaccacgcgcagaacatcaagtccgccaagcggatggtcgagcgtcagcgcgcccaggtc
tgggacgtgctggaagaggtcatcaccgagcacccggtactgctgaaccgggcgcccacg
ctgcaccggctgggcatccaggcgttcgagccccagctgatcgagggcaaggcgatccag
atccacccgctcgtctgctccgcgttcaacgcggacttcgacggtgaccagatggcggtg
cacctgccgctgtcggccgaggcgcaggccgaggcccggatcctgatgctgtcgacgaac
aacatcctgaagcctgctgacggccgtccggtcacgatgccgacccaggacatgatcatc
ggcatctacttcctgacgatgctcaaggaaggcgagctcggcgaaggccgggcgttcagc
tcgctggcggaggccctgatggccttcgaccgcaaggagctgtcgctgcaggccaagatc
acgctccggctcgaccaggccggtgcgccggccggctcggcggagcgcccgaacggtggg
ttctcgctggagaccacgctgggtcgcgccctgttcaacgaggcgctgccgagcgactac
accttcgtggacgccgaggtcggcaagaagcagctgggctcgatcgtcaacgatctggcc
gagcgctactccaaggtccaggtggcctactgcctggacgcgctgaaggatctcggtttc
cgctgggccacccgttccggtgtcacggtgtcgatcgacgacttcagcacgccgccgagc
aagcccgagatcatggcgcgctacgaggcccaggccgagaaggtccagaagcagttcgag
cggggtctgatcacctcgtccgagcggcggcaggaactgatcgagatctggaccggcgcc
aacgccgaggtcggcaaggcgatggaggagaacttcgccaaggccaacccgatctggatg
atggtgcactcgggtgcgcgcggaaacatgatgcagatccggcagatcgccggtatgcgt
ggtctggtggccaacccgaagggcgagatcatcgcccggccgatcaagtccaacttccgc
gagggcctgtcggtggtcgagtacttcatcgccacccacggtgctcgtaagggtcttgcc
gacaccgcgctgcggaccgccgactcggggtacctgacccgtcgtctggtggacgtgtcg
caggacgtcatcatccgcgaggaggactgcggtaccgagcgtggtctgccgaagctgatc
ggcgagcccggtccggacggcaaggtcgtgcacgccgagaacgtggagaccagcgcgtac
gcacgcaccctggccaccgacacgttcgacgccaagggcgccctggtactggccgccggc
agcgacctgggcgatgtgtccatcgccgctctggtggccgcggggatcgagcaggtcaag
gtccgctccgtgctgacctgtgacgccaagacggggacctgcgcgaagtgctacggccgt
tcgctggcgaccggcaagccggtcgacatcggtgaggccgtcggcatcatcgcggcgcag
tccatcggtgagcccggtacgcagctgacgatgcgtaccttccacaccggtggtgtcgcg
ggtgatgacatcacccacggtctgccgcgtgtggtcgagctcttcgaggctcgccagccc
aagggcaaggcgccgatcggtgaagctgccggccggatcgcgatcgaggacaccgacaag
acccggaagctggtgctcaccccggacgacggttccgaggaggtcgcctacccggtgtcg
aagcgggcccggttgctgatcgaggacggtcagcaggtcgaggtcggccagcagctgacg
caaggtactccggacccgcaggaagttctgcgcatcctgggtatccgcaaggcgcaggag
cacctggtcgacgaggtccaggccgtgtaccggtcgcagggtgtggccatccacgacaag
cacatcgagatcatcgtccggcagatgctgcgccgggtcacggtgatcgagtccggcgag
gcgaacctgctgccgggtgagctggcggaccggttgctgttcgaggccgagaaccgtcgc
gtcgtggccgagggcggtacgccggcctcgggtcgtccggtgctgatggggatcaccaag
gcgtcgctcgcgaccgagtcgtggctgtcggccgcctccttccaggagacgacccgggtc
ctgaccgaggccgcgatccacggcaagtccgactcgctggtcggtctgaaggagaacgtc
atcatcggaaagctgatcccggcgggtaccggcatggaccggtaccgcaacatccgggtg
gagcccaccgaggaggcgaaggccgcgatgtactcgatggtcggctacgagtcgtacgac
tacgacttcggtccgtccgccgggcaatcggtcccgctcgacgacttcgatctgggctcg
taccagaagtag
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integrated database retrieval system
