Kribbella sp. CA-293567: OX958_19225
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Entry
OX958_19225 CDS
T10137
Name
(GenBank) DEAD/DEAH box helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
kri Kribbella sp. CA-293567
Pathway
kri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OX958_19225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kri03019
]
OX958_19225
03400 DNA repair and recombination proteins [BR:
kri03400
]
OX958_19225
Enzymes [BR:
kri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OX958_19225
Messenger RNA biogenesis [BR:
kri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OX958_19225
DNA repair and recombination proteins [BR:
kri03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
OX958_19225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
RecQ_Zn_bind
MarR_2
Motif
Other DBs
NCBI-ProteinID:
WBQ02120
LinkDB
All DBs
Position
complement(4191001..4193115)
Genome browser
AA seq
704 aa
AA seq
DB search
MGDIKLSDDRAKTAAEVIHAIAGAGASLRADQETAVAALCEPNARVLVVQATGWGKSAVY
WAATAIRRSEGAGPTLVVSPLLSLMRDQVAAAGRAGLRAATLNSSNVDNWSGIENDLRSG
AIDVLLVSPERLANPGFGRRVLDGLAGQIGLLVIDEAHAVSDWGHDFRPDYRRVSDVLQK
LNPQTPVLATTATANARVTDDVAHQLGASTLVLRGPLARSSLQLAVVDALSPLDRFAWVV
DHLPKLPGSGIVYTLTVSDAQRLAAAIQEVHGPAVPVAAYTGGLEAGERERLEDALRNNE
FKALIATSALGMGYDKPDLGFVVHVGSPPSPVSYYQQVGRAGRGIDHAVVALLPSDADAG
VWDYFATATIPVPDQVNRLLRGLEAYEPDQPATVPALEAETGLRRGRVELMLKQLAVDGA
VERVDRGWVRTAADWSFDAAHYDGIVSVRRREADIMRAYTRGERCLMQLLQESLDDPSAE
PCGRCSVCLGLLPDPLTARPDPETVQAITRLLRGETHVLEPRKMWPGGAFGAKGKIPPGL
MAEPGRSIVYADAPEWREVIRAVFSSTPAPDALEALKAGCVAALSRWRDAWSRRPEVVVT
LPAAGHRELVTEVANHLAEIGRLERAELTVNGAAFSDELSSAEEAKVWRDGVSIEPATAQ
AISGRSVLLVVDASSSQWPVTVAAAKLRESGAAAVLPLLIHRRP
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgggtgacatcaagctgtcggatgatcgggcgaagaccgccgcggaagtgatccacgcg
atcgccggggccggcgcgagcctgcgcgccgaccaggagaccgcggttgccgcgctgtgc
gagccgaacgcccgagtgctggtggtccaagccaccggatggggcaagtccgcggtgtac
tgggccgccacggcgatccgccgctccgaaggcgccgggccgacgctggtggtgtcaccg
ctgttgtcgttgatgcgagaccaggtggccgcggccggtcgagccggcctgcgggccgcc
acgctgaactcctcgaacgtcgacaactggtccggaatcgagaacgacctgcgttccggc
gcgatcgacgtactgctggtgtctcccgagcggctggccaaccctggcttcggccggcgg
gtgctggacgggctcgccgggcagatcggtctgctggtgatcgacgaggctcacgccgtc
tccgactggggacacgacttccggccggactaccgccgggtgtccgacgtcctgcagaag
ctcaatccgcagacgccggtgctcgcgaccaccgcgaccgccaacgcgcgagtgaccgac
gacgtcgcgcaccagctgggtgcgtcgacgctcgtactgcgaggtccgctggcccggtcg
agtctgcaactggcggtcgtcgacgcgctgtcgccgctggaccgcttcgcctgggtcgtc
gatcacctgccgaagcttccgggctccggcatcgtctacacgctgactgtctccgatgct
caacggctggctgccgcgatccaggaggtgcacggcccagcggttccggtcgcggcgtac
acgggcgggctggaggcgggagagcgggagcggctcgaagacgccttgcgaaacaacgag
ttcaaggcgctgatcgcgacgtccgcgctgggaatggggtacgacaagcccgacctcgga
ttcgtcgtacacgtcggatcgccgccgtcgccggtgtcgtactaccagcaggtcgggcgt
gccgggcgtggcatcgaccacgcggtggtcgcgttgctgccgtcggacgccgatgccggg
gtctgggactacttcgccaccgcgacgatcccggtgccggaccaggtgaacaggttgctg
cgcgggctggaggcctacgagccggatcaacccgcgaccgtgccggccctggaggcggag
accggcctgcgccgcgggcgggtcgagctgatgctcaagcagctggcggtcgacggcgcg
gtcgagcgggtcgaccgcggctgggtgcggacggctgccgactggagtttcgacgcggcc
cactacgacggcatcgtctcggtccgccggcgcgaggccgacatcatgcgcgcctacacc
cgtggtgaacgttgcctgatgcaactacttcaggagtcgctggacgatccgtccgccgaa
ccgtgcggccggtgctcggtctgcctgggactgctgcccgatccgctgaccgcgcggccg
gatccggagaccgtgcaggcgatcacgcgactgctgcgtggcgagacgcacgtgctggag
cctcgcaagatgtggccgggtggtgcgttcggcgcgaaggggaagatcccgccggggttg
atggccgagcccggtcgcagcatcgtctatgccgacgctcccgaatggcgggaagtcatc
cgggcggtgttcagttcgacgccggctccggacgccttggaggccttgaaggccggctgc
gtcgccgcgctgtcgcgctggcgcgacgcctggtcccgtcggcctgaggtggtcgtcacg
cttccggccgccggccatcgggagctggtgaccgaggtcgccaaccacctggcggagatc
ggccgcctcgagcgcgccgagctgaccgtgaacggcgctgccttcagtgacgagctctcg
tcggccgaggaggcgaaggtgtggcgcgacggggtgtcgatcgagccggccacggctcag
gcgatcagcgggcgatcggtcctgctggtcgtcgacgcgtcgtcctctcaatggccggtc
accgtcgccgccgccaagcttcgcgagtcaggtgcagccgcggtgcttcctttgctcatt
catcgccgcccctga
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