Kribbella sp. CA-293567: OX958_19315
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Entry
OX958_19315 CDS
T10137
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
kri Kribbella sp. CA-293567
Brite
Enzymes [BR:
kri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
OX958_19315 (hrpA)
Messenger RNA biogenesis [BR:
kri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
OX958_19315 (hrpA)
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GFIT
Other DBs
NCBI-ProteinID:
WBQ02137
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Position
4209769..4213863
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AA seq
1364 aa
AA seq
DB search
MPEARTESQSPTPATGPSQDPGRPRRPRRRRKKPAGGSAVGTGDTAPPESGESRAGSGGS
EVAALAARLEGLIGVDRDQLGRRLERLRGLREDGKRENALSDITARIEQAEQRVEQRRLG
VPEIRYPEELPVSQLKDEIAAMIRDHQVVVIAGETGSGKTTQIPKICLELGRGVRGMIGH
TQPRRLAARTVAERIAEELDTELGDAIGYAVRFTDKVSDRSLVKLMTDGILLAELQRDRE
LSRYDTLIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFAEHFADAAGR
PAPIVEVSGRTYPVETRYRPINDPDDPSTIDRDQTQAILDAVDELAGEAPGDVLVFLSGE
REIRDTADALADHNLRNTEILPLYARLSNAEQHRVFQSHGSSRRIVLATNVAETSLTVPG
IKYVIDPGTARISRYSHRTKVQHLPIEPVSQASANQRMGRCGRTSDGICIRLYSEEHFDS
RPEFTDPEILRTNLASVILQMTAIGLGDIAAFPFIDEPDRRSITDGLQLLTELGAIDSAK
AAERTRQLTPVGRQLAQIPLDPRLARMIVEAGKHGCVREVMVIASALSIQDPRERPTDAE
AQATQAHARFRDPTSDFLGFLNLWNYLKKQQKELSGNQFRRMCKSEYLNYLRVREWQDIF
AQLRQVATQIGVTLNSGEAADPQAVHVSLMSGLLSHLGLKDPANQHQYIGARGAKFAIFP
GSALFKKPPQFVMAAELVETSRLWARVNARIEPEWAEDLAQHLVKRSYSEPHWERKAGAV
MAYEKVTLYGVPIVAHRKINYGAVDPEVSRELFIRHALVEGDWDTHHKFFHENRKLIEEV
EELEERTRRRDLLVDDETLFAFYDERIGAEVVTGRHFDTWWKTARQRDHDLLDFERSLVV
REGAEVKEEEFPLTWSQNGMTFDLTYAFEPGTDADGVTVHLPLLVLNQVGADGFEWSVPG
FREELVTTLIKSLPKAIRRNIVPAPDHARQILPQLDPASGPLVEAMARELRQLRDVIIDE
DDWDWSRVPEHLRMTFRVVDDHGKTVAEGKDLAALKERLKPKTKAAISQVASKAVSGLEK
SGLTDWTFGDLPRSFSEHRNGLTVAGYPALVDDGKSVAIRLQETERDQAAAMWTGTRRLL
LLTMPSVIDVVQRHLTNQQKMTLLAGPHRSVGDLLDDAISAAVDQLMAAAGGPVWNLTAF
SFLRDAVRSDLADTVLTILQQVEQVLANARTVDKLISRSSSPALLAALSDVRGQLEGLVH
RGFITEAGAQRLPDLARYLRGIEQRLDKIGANAMRDRSGMAIVQTLTDEYQKRLRAVPTG
KYPSPELLEVRWMLEELRISLFAQTLGTPYPVSDKRIRKALTTA
NT seq
4095 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaagcccggaccgaatcgcagagtcccaccccagctaccggtccttcccaggat
cccggtcggccccgccgtcctcgccgccgccgcaagaagcccgcgggcggttctgccgtc
ggcaccggcgacaccgcaccaccggagagcggtgagtcgcgcgccggaagtggtgggagt
gaggttgcggcgctggcggcccggctggaagggctgatcggtgtcgaccgggatcaactc
ggtcggcggctggagcggttgcgcggactgcgggaagacggcaagcgggagaacgcgctc
tccgacatcaccgcgcggatcgagcaggccgagcagcgggtggagcagcggcggctcggc
gtaccggagatcaggtatcccgaggagctgccggtcagtcagctcaaggacgagatcgcg
gcgatgatccgggaccatcaggtggtggtgatcgcgggtgagaccgggtccggcaagacc
acccagatccccaagatctgcctggaactgggccgcggcgtccgcggcatgatcgggcac
acccagccccggcggctggccgcgcggacggtggccgagcggatcgcggaggagctggac
accgagctcggcgacgccatcgggtacgccgtccgcttcaccgacaaggtcagcgaccgc
tctctggtgaagctgatgaccgacggcatcctgctggccgagctgcagcgcgaccgggag
ctgagccgctacgacaccctcatcatcgacgaggcacacgagcgcagcctcaacatcgac
ttcatcctcggctacctcaagcaactgctgccccggcgtcccgacctcaaggtgatcatc
acctcggcgaccatcgacccggagcggttcgccgagcacttcgccgacgccgccggccgg
cccgcgccgatcgtcgaggtctccggccgcacctatccggtcgagacccgctaccgcccg
atcaacgatccggacgacccgagcacgatcgaccgggaccagacccaggcgatcctggac
gcggtcgacgagctggccggcgaggcaccgggcgacgtgctggtcttcctcagcggcgag
cgggagatccgcgacaccgccgacgcgctggccgaccacaacctgcgcaacaccgagatc
ctgccgctctacgcccggctgtcgaacgccgagcagcaccgtgtcttccagtcgcacggg
tccagccggcggatcgtgctcgccaccaacgtcgccgagacctcgctgaccgtgcccggc
atcaagtacgtgatcgatcccggcaccgcccggatcagccgctactcgcaccgcaccaag
gtgcagcacctgccgatcgagccggtttcgcaggccagcgccaaccagcgcatgggccgc
tgcggccggaccagcgacggcatctgcatccggctgtactccgaggagcacttcgacagc
cgcccggagttcaccgaccccgagatcctgcgcaccaacctggcctccgtcatcctgcag
atgaccgcgatcggcctcggcgacatcgccgcgttcccgttcatcgacgaacccgaccgg
cgcagcatcaccgacggcctgcaactgctgaccgaactcggcgcgatcgactcggccaag
gcggccgagcgcacccggcagctgaccccggtcggccggcagctggcgcagatcccgctc
gacccgcggctggcccggatgatcgtcgaggcgggcaagcacggctgcgtccgcgaggtg
atggtgatcgcctccgcgctgtcgatccaggacccgcgcgagcgcccgaccgacgccgag
gcccaggccacccaggcgcacgcgcggttccgcgacccgacctccgacttcctcggcttc
ctcaacctgtggaactacctcaagaagcagcagaaggagctgtccggcaaccagttccgc
cggatgtgcaagagcgagtacctcaactacctccgcgtccgcgagtggcaggacatcttc
gcgcagctgcgccaggtcgccacccagatcggcgtcacgctcaactccggtgaggccgcc
gatccgcaggccgtgcacgtctcgctgatgtccggtctgctgtcccacctcgggctcaag
gatcccgccaaccagcaccagtacatcggtgcccgcggcgccaagttcgcgatcttcccc
ggctcggccctgttcaagaagccaccgcagttcgtgatggccgccgagctggtcgagacc
tcgcggctgtgggcccgggtcaacgccaggatcgagccggagtgggccgaggacctggcc
cagcacctggtcaagcgctcctactccgaaccgcactgggaacgcaaggccggtgcggtg
atggcctacgagaaggtcaccctgtacggcgtaccgatcgttgcccaccgcaagatcaac
tacggcgcggtggacccggaggtgtcgcgcgagctgttcatccggcacgcgctggtcgag
ggcgactgggacacccaccacaagttcttccacgagaaccgcaagctgatcgaggaggtc
gaggagctggaggaacgcacccggcgccgcgacctgctggtcgacgacgagacgctgttc
gccttctacgacgagcggatcggcgccgaggtggtcaccggccggcacttcgacacctgg
tggaagacggcccggcagcgcgaccacgacctgctcgacttcgagcggtcgctggtggtt
cgcgaaggcgccgaggtcaaggaggaggagttcccgctcacctggtcgcagaacgggatg
accttcgacctgacctacgccttcgagcccggcacggacgccgacggcgtcaccgtgcac
ctgccgctgctggtcctcaaccaggtcggcgcggacggtttcgagtggagcgtgccgggg
ttccgggaggaactcgtcaccaccttgatcaagtcgttgccgaaggcgatccgccgcaac
atcgtgccggcccccgaccacgcccggcagatcctcccccagctcgacccggcctcgggt
ccgctggtcgaggcgatggcgcgcgagctgcggcagttgcgcgacgtgatcatcgacgag
gacgactgggactggtcgcgggtgccggagcacctgcggatgaccttccgggtggtcgac
gaccacggcaagacggtggccgagggcaaggatctcgcggcgctgaaggagcggctcaag
ccgaagacgaaggccgcgatctcccaggtcgcctcgaaggcggtcagcgggctggagaag
agcggcctgaccgactggaccttcggcgacctgccacgtagcttctccgagcaccgcaac
ggactcaccgtggccggctatccggccctggtggacgacggcaagagcgtcgccatccgg
ctgcaggagaccgagcgcgaccaggccgccgcgatgtggaccggcacccgccggttgctg
ctgctcaccatgccgtcggtgatcgacgtggtccagcggcacctgaccaaccagcagaag
atgacgctgctggcaggcccgcaccgcagtgtcggcgacctgctggacgacgcgatctcg
gccgccgtcgaccagttgatggcggcggccggcggcccggtctggaatctcaccgccttc
tcgttccttcgcgacgccgtccggtccgacctcgccgacaccgtgctgacgatcctccag
caggtcgagcaggtgctggcgaacgcgcgaacggtcgacaagctgatctcccgctcctcc
agcccggccctgctcgcggcgctgtccgacgtccgggggcaactggaggggctggtccat
cgcggcttcatcaccgaggccggagcccaacggctgcccgatctcgcccgctacctgcgc
gggatcgaacagcggctggacaagatcggcgccaacgcgatgcgcgaccgctccgggatg
gcgatcgtgcagacgctgaccgacgagtaccagaagcgcctacgcgccgtaccgaccggg
aagtacccgagtccggaactcctcgaggtccggtggatgctcgaggaactccggatcagc
ctgttcgcgcagacgctcggcacgccgtacccggtctccgacaagcggatccggaaggcg
ctcaccaccgcctag
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