Kribbella sp. CA-293567: OX958_20095
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Entry
OX958_20095 CDS
T10137
Name
(GenBank) helicase-related protein
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
kri Kribbella sp. CA-293567
Brite
KEGG Orthology (KO) [BR:
kri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kri03019
]
OX958_20095
Enzymes [BR:
kri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
OX958_20095
Messenger RNA biogenesis [BR:
kri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
OX958_20095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
AAA_22
CON_HrpB
Cas3-like_C_2
RoxA-like_Cyt-c
AAA_16
Motif
Other DBs
NCBI-ProteinID:
WBQ02288
LinkDB
All DBs
Position
complement(4378512..4381253)
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AA seq
913 aa
AA seq
DB search
MPLPDPPDPLPDALPGLLPDPSVPGADLPVRTVLPATVDAVRRHGTAVLVAPPGSGKTSL
LPLALADALGGTVVVAEPRRMATRAAAARLATLIGEPLGRRVGYAMRGERSGGRDLRVEV
VTTGLLVRRLQRDPGLPGVAAIVIDECHERHLDADLLLAFCVDIRANLREDLAIVATSAT
ADTVTLSRALGVDRPAPVVTASAATFPVQLEWAPPPVPVPLLPGGRVDQRLLDHVAAVVE
RALGENSGDVLVFVPGEAEINAVARRLARHNVLPLFGRQSRAEQDRALTPGATRRIVVTT
SVAESSLTVPGVRVVVDSGLAREPRTDQSRGLGTLVTCRVSKSSAEQRAGRAGREGPGRV
YRCWSATDHSHLDDHAAPEIATADLAGFALDLAVWGAPGGEGLSLLEAPPTVAMGAAIEL
LRRLDAIDDAGRITERGRQMAAIGAHPRLARALLDGTPRVGADRAREIVAMLSEESGRDF
GDDLPARWRALRRGVDRGATARWREETKRLGRGAEASARAASGQTAEAAVGVGSTGRAVG
PAAGVGSAERVVDAAAGVGSAESVARVGQAAAGTGARVSAGGAAMGAVPDDLAAGIVVGL
AYPDRIARARDADSATYQMSGGTGAALDPQSPLRTTPWLAIAVADRAPGRADARIRLAAP
IDEATAREVGGELISVADQIRWDDGRIVTRRVQTLGAIVLTDVPLTKPDPLLVQAAVRDG
LRRSGLGVLRWSEAAVALRDRLAFCHAHLGAPWPAVDDAALLAGLDDWLGPELTSVRTSR
DLAHLDLASALRRLLPWPAATRFGELAPERLPVPSGSQVRLAYDGAEPPVLAVKLQEVFG
WTTTPVVADGRVPVVLHLLSPARRPVAITSDLASFWIQGYPQVRADLRARYPRHPWPEDP
LTAPPTKRVKPRQ
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
gtgccgttgcccgatccgcctgacccgttgcctgacgcgttgcctggcctgttgcccgat
ccgtccgtccccggggcggatctgccggtccggaccgtcctgcctgccacggtcgacgcc
gtacgccgtcacggcaccgcggtcctggtcgcgccgcccggctccgggaagacgtcgttg
ctgccactcgctctcgccgacgcactcggcggcacggtcgtggttgctgagcctcgccgg
atggccacccgcgccgccgcggcccggttggcgacgctgatcggagaacctctcgggcgc
cgagtcggatacgcgatgcggggtgaacgcagcggtggccgcgatctccgggtcgaggtg
gtgacgacaggcctgctcgtacgccgcctgcagcgcgacccgggactcccgggtgtcgcc
gcgatcgtgatcgacgagtgccacgagcgtcacctcgatgcagatctgctgctcgcgttc
tgcgtagacatccgcgcgaacctgcgcgaggatctcgcgatcgtcgcgacttcggccacc
gccgacaccgtcacgctgagccgcgcactcggcgttgatcggcctgcgccggtggtgact
gcttcggcggcgaccttccctgtgcagctcgagtgggcgccgccgccggtcccggtgccg
ctactgcccggcggacgggtcgaccagcgtctgctggatcacgtcgctgccgtggtcgag
cgggcgctgggcgagaattccggtgacgtgctcgtgttcgtgccgggggaggcggagatc
aatgcggtggcgcgccggttggcccggcacaacgtgctgccgttgttcggccggcagtcc
cgggctgagcaggatcgggcgctgacgccgggggccacgcgccggatcgtggtcaccacg
tcggtcgcggagagttcgctgacggtgcctggcgttcgggtcgtcgtcgattcgggtctt
gcgcgcgaaccccggaccgatcagtcccgtgggctgggcacgctggtcacctgccgggtg
tcgaaatcgtcggccgagcagcgggcgggtcgcgccgggcgagagggtcctgggcgggtg
taccggtgctggtcggcgaccgatcactcacatctcgacgatcatgctgctccggagatc
gccactgccgatctggctggtttcgcgttggatcttgcggtgtggggtgcgcctggcgga
gaagggctgagcttgctggaggcgccgccgacggtggcgatgggtgcggcgatcgagttg
ctgcgccggctggatgccatcgatgacgccggccggatcaccgagcggggacggcagatg
gcggcgatcggggcgcatccgcgactggctcgggcgctgctggacggtacgccgcgagtc
ggtgctgaccgggcgcgggagatcgtggcgatgttgtcggaggagtccgggcgggacttt
ggggatgacctgccggcgcggtggcgagcgctgcggcgaggcgtcgatcgtggtgccacg
gcgcgctggcgggaggagacgaagcggctggggcgcggcgctgaagcctcggcgcgagcg
gcgtcgggtcagacggcagaagccgcagtgggagtcgggtcaactggtcgcgcggtggga
cccgcagcaggggtcgggtcggctgagcgggttgtggatgccgcagcgggggtcgggtcg
gctgagtcggttgctcgggttgggcaagcggctgccggaactggggcgcgggtatcggcg
ggcggtgccgcgatgggagccgtaccggatgatttggcggctgggattgtggtggggctg
gcttaccccgatcggattgcgcgagcgcgagacgccgactcggcgacgtaccagatgtcg
ggcgggacgggcgccgcgctggatccgcagtcgccgctgcggaccacgccctggctggcg
atcgcggtggccgaccgggcgccggggcgtgctgatgcgcggatccgtttggcggcgccg
atcgacgaggcgacggcgcgtgaggtcggcggtgagctgatatcggtcgccgaccagatc
cgctgggacgatgggcggatcgtgacgcggcgggtgcagacactcggcgcgatcgtcctc
accgacgtaccgctgaccaagcccgatccgctgctggttcaggcggcggttcgcgatggt
ctgcggcgcagcggtctaggcgtactgcgctggtccgaggccgctgtcgcgttgcgcgat
cgacttgcgttctgccacgcccacctcggagcgccgtggcccgccgttgacgatgcggca
ctactggccggcctcgacgattggctcggcccggagctcacctctgtccgcacctctcgc
gatctggcccatctggacctcgcgtccgccctacggcggctgctgccgtggcctgcagcg
acccggttcggtgagctggcgccggaacgcctgccggtgccgtcgggatctcaagtacgg
ctcgcgtacgacggtgccgagccgccggtcctcgcggtgaagctccaggaggtcttcggg
tggacgacgacgcccgtggtggcggacggccgggtcccggtggtgctgcatctgctgtcg
ccggctaggcggccggtcgcgatcaccagtgatctcgcgtcgttctggatccagggctat
ccccaggtccgagccgacctgcgagcccgctacccgcggcacccctggccggaggacccc
ttgacggcaccgcccacgaaacgcgtcaaacctcgccagtag
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