Kribbella sp. CA-293567: OX958_26350
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Entry
OX958_26350 CDS
T10137
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
kri Kribbella sp. CA-293567
Pathway
kri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OX958_26350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kri03019
]
OX958_26350
03400 DNA repair and recombination proteins [BR:
kri03400
]
OX958_26350
Enzymes [BR:
kri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OX958_26350
Messenger RNA biogenesis [BR:
kri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OX958_26350
DNA repair and recombination proteins [BR:
kri03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
OX958_26350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
MarR_2
Cas3-like_C_2
HTH_11
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
WBQ03483
LinkDB
All DBs
Position
5705995..5707620
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AA seq
541 aa
AA seq
DB search
MRELLKTIARERFGWAELRPPQLEAMSAVMAGRDALVVMPTGAGKSAIFQVPALLLDGPA
VIVSPLISLQHDQVVGLLDAGDGSLTARELNSTIGATERAEIYEALATGELRYLFLAPEQ
LAKTDVLDRLAETKPALFVVDEAHCVASWGHDFRPDYLRLGDAAEALGRPPVLALTATAS
RPVREEIAATLRLRDPLQVVAGFDRPNLSLEVLSSADAERRRELVLEQAAGEPGAGIVYT
ATRRETEEYAAALTERGRNAAPYHAGLKKTERSATHEAFLAGELEVVVATTAFGMGIDKP
DIRFVVHASLADSLDSYYQEIGRAGRDGQPAKAILVHGPGDLGLRRFLAPTPPDESTVAD
VLAAVRTAEKPVLRSRLADRLELSRTLVGRCCALLEQAQAVRFDRRNRLRPVGESATAAA
DAVAVAEVACRVTQSRLDMMREYAETRGCRRQFLLSYFGDDLAEPCGNCDTCAAGLPEPA
TTRSSQYGLNERVRHHDFGEGSVLRAEDDRMVVLFDEFGYRTLSLDAVATNELLEPVTAP
N
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
gtgcgggaactgctgaaaaccatcgctcgggaacgcttcggctgggcagagcttcggccc
ccacaactggaagccatgtcggcggtgatggccggccgggatgccttggtggtgatgccg
accggcgcggggaagtccgcgatcttccaggttccggccctgctgctggacggaccggcc
gtgatcgttagcccgctgatctccctccagcacgatcaggtcgtcggcctgctcgacgcc
ggcgacggttccctgaccgcccgtgaactgaacagcacgatcggcgcgaccgagcgggcg
gagatctacgaagcgctggccaccggcgagctgcgctacctgttcctggcgcccgaacaa
ctggcgaagaccgacgtcctcgaccggctggccgagaccaagcccgcgttgttcgtcgtc
gacgaggcgcactgcgtggcctcctggggacacgacttccggcccgactacctccgcctc
ggcgacgctgccgaagcgctcggccggccgcccgtgctggccctcaccgcgaccgcgtcg
cgaccggttcgcgaggagatcgccgccacgttgcggttgcgcgaccccctgcaggtcgtg
gccggcttcgaccggccgaacctgtccctcgaggttctctcctccgcggacgccgagcgc
cgccgcgaactcgtcctcgagcaggcggccggcgaacccggcgcaggaatcgtctacacc
gccacccgccgggagaccgaggagtacgccgccgcgctgaccgagcgtggtcgcaacgcg
gcgccgtaccacgcgggcctgaagaagaccgagcgatcggccacccacgaggccttcctg
gccggcgaactggaggtcgtcgtcgccaccaccgccttcgggatggggatcgacaaaccc
gacatcaggttcgtcgtgcacgcctcgctggccgactcgctcgattcctactaccaggag
atcggccgggccggacgtgacggtcaaccggccaaggccatcctggtgcacggtcccggc
gatctgggtctccgccgattcctggcgccgacgccgccggacgagagcacggtggccgac
gtactggcggccgtccggaccgccgagaagcccgtactgcgaagccgtctcgccgatcgg
ctcgaactgtcacgaacccttgtcggccgttgctgcgccttgctggaacaggcccaggcc
gtccggttcgaccgacgcaaccgcctgcgccccgtcggcgaatcggcgaccgcggcggca
gacgccgtcgcggtcgccgaggtcgcttgccgggtcacccagtcgcgcctcgacatgatg
agggagtacgccgagacgcgcggctgccggcgccagttcctgctgtcctacttcggggac
gacctggccgaaccgtgcggcaactgcgacacctgcgctgccggcctgcccgagccggcg
accacccgcagttcgcagtacgggctgaacgagagggtgcggcatcacgacttcggcgaa
ggctcggtactgcgagcggaagacgaccggatggtcgtgctcttcgacgaattcggatac
cgcaccctgtccctcgatgccgttgccaccaacgaactgctggagccggtgacggcaccg
aactga
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