Kocuria rosea: EQG70_07015
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Entry
EQG70_07015 CDS
T06074
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
krs
Kocuria rosea
Brite
KEGG Orthology (KO) [BR:
krs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
krs03019
]
EQG70_07015 (hrpA)
Enzymes [BR:
krs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EQG70_07015 (hrpA)
Messenger RNA biogenesis [BR:
krs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
EQG70_07015 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_22
AAA_19
AAA_25
nSTAND3
AAA_23
nSTAND_NTPase5
PhoH
ABC_tran
TsaE
Motif
Other DBs
NCBI-ProteinID:
QCY32664
LinkDB
All DBs
Position
complement(1516597..1520634)
Genome browser
AA seq
1345 aa
AA seq
DB search
MSASLSSPRTIVYPENLPVSARREDIMGAIAAHQVVVIAGETGSGKTTQIPKMCLELGLG
ERGLIGHTQPRRIAARSVAERISSELGEKIGGTVGYQVRFTSEVGADSRVKLMTDGILLA
EIQHDRLLQKYSAIIIDEAHERSLNIDFLLGYLRRILPRRPDLKVVITSATIDPERFARH
FAPEETEGDEPGRAPVIEVSGRTYPVEIRWRPLAQPRSGDGGQDAEDAGDGLEDEDRDPI
DAVCDAVEELSAEPPGDILIFFAGEREIRDAQEALQGTLKRVRGLADAEILPLFGRLSMA
EQHRVFAPSGRRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSARTKVQRLPIERISQ
ASANQRAGRCGRVSDGICIRLYSEEDYLSRPEFTDPEILRTSLAAVILQMTSVGVVKEPG
DIERFPFVEPPESRAVKDGVALLRELGALKEPRGASPRGGRDDDARGGPLTPVGRQLAQL
PVDPRLGRMIVEADRRGCAREVMVLAAALTVQDPRERPLEKRQQADELHKRFFDENSDFT
SWLLLWRYVQEQQEELSSTQFRKLCRREHLNFLRIREWQDLYAQLRQMGQQVGIRVGKGR
EVDPSGKEREIHVSLLAGLLSHIGLKDERKREYQGARGSRFAVFPGSNLFKKSPDWVMSA
ELVETSRLWARVNAAIDPLWAEELAPHLVKRSVSEPHWSRAQGSVMAYEKVTLYGVPVVA
QRRINFWRVDPALARELFLRHALVEGDWQTRHRFWARNRKRLAEVEELENRLRRKDLRID
DEALFAFYDARIPESVVSARHFDAWWKKARQQDEHLLDLDPEDLIAEEAGGYDESLYPRQ
WVRRTRDGELVLDLAYEFAPGSDQADGVTVRVPVLFLNQLEPEQFRWQIPGFRTELVTAL
IKSLPKAVRRNFVPAPDVARQAVAMLDADFDPAVDALEPSLELVLRRLKGHVVPPGSWNW
EAVPAHLRMRFEVRDRRNRVLGEGEDLEALRAELHDEIRAALAESLGAVPGAAPGAPAGG
PARKGPRSPAPRPPDAAPAPPALERSGLTAWPEEDLPRSVETTVAGQRITGWPALVPERA
RAAGSRHAGREATVAVRILSSAAEQRAAQRRGVITLLQLRIPSPERYVLEHLNNREKLVF
TQNPHGSVTELIADCTVAAIDKLTPPEPPFTRAEFDALHEHVRAELIDTVFQVTALVEQV
LSGAARIRKQLKRSSSLAAVNSLNDVKAQLEHLVHPGFVAATGYDQLQHLPRYVRAMEVR
LEKLAGHLQRDTVGMLAVQKLEDDYDAALDALPPHAPVPDELRRVAWMIEELRVSLFAQE
LGTAHTVSEKRIRKALKDALGAARA
NT seq
4038 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcatccctgagcagcccccgaaccatcgtctaccccgagaacctcccggtctcc
gcgcgccgcgaggacatcatgggcgcgatcgccgcgcaccaggtggtcgtgatcgccggc
gagaccgggtccggcaagacgacccagatccccaagatgtgcctcgagctcggcctgggc
gagcgcggcctgatcggccacacccagccgaggcggatcgccgcgcgctcggtcgcggag
cggatctcctcggagctcggcgagaagatcggcggcacggtcggctaccaggtgcgcttc
acctccgaggtgggcgcggactcacgggtcaagctgatgacggacggcatcctgctcgcc
gagatccagcacgaccgcctgctgcagaagtactcggcgatcatcatcgacgaggcccac
gagcgctccctcaacatcgacttcctgctgggctacctccggcggatcctgccccggcgc
ccggacctgaaggtggtcatcacctcggccacgatcgaccccgagcgcttcgcccggcac
ttcgctccggaggagaccgagggcgacgagccggggcgggccccggtcatcgaggtctcg
ggccgcacgtacccggtggagatccgctggcgcccgctggcccagccgcgctccggggac
ggcggccaggacgccgaggacgccggcgacgggctggaggacgaggaccgggacccgatc
gacgccgtgtgcgacgccgtcgaggagctctccgcggagccgcccggggacatcctgatc
ttcttcgccggcgagcgggagatccgcgacgcccaggaggcgctgcagggcaccctgaaa
cgggtccggggcctggccgacgccgagatcctgcccctgttcggccggctgtccatggcg
gagcagcaccgggtgttcgcgccgtcgggccgccgccggatcgtgctggccaccaacgtg
gccgagacgtcgctgaccgtccccggcatcaagtacgtgatcgacccgggcacggcccgc
atctcgcgctactcggcgcggaccaaggtgcagcgcctcccgatcgagcggatctcccag
gcctcggcgaaccagcgggcgggacgctgcgggcgcgtctcggacggcatctgcatccgg
ctgtactcggaggaggactacctctcccgcccggagttcaccgaccccgagatcctgcgc
acgtccctggcggccgtgatcctgcagatgacctcggtgggggtcgtcaaggagcccggg
gacatcgagcgcttccccttcgtggagccgccggagtcccgggccgtcaaggacggcgtg
gccctgctccgggagctgggcgccctcaaggagccgcggggcgcgtccccgcggggcggg
cgggacgacgacgcccgcggcgggcccctcaccccggtgggccgccagctggcgcagctg
ccggtggacccgcggctgggccggatgatcgtggaggcggaccggcggggctgcgcccgg
gaggtcatggtcctcgcggcggcgctgaccgtccaggacccccgcgagcgccccctggag
aagcggcagcaggcggacgagctgcacaagcggttcttcgacgagaactccgacttcacg
agctggctgctgctgtggcgctacgtgcaggagcagcaggaggagctctcctcgacgcag
ttccggaagctgtgccggcgggagcacctgaacttcctgcgcatccgggagtggcaggac
ctctacgcccagctgcgccagatgggccagcaggtcggcatccgggtcggcaagggccgc
gaggtggacccctccgggaaggagcgggagatccacgtctcgctgctggcggggctgctc
agccacatcgggctcaaggacgagcgcaagcgggagtaccagggcgcccgcggctcgcgg
ttcgccgtcttcccgggctccaacctgttcaagaagtcccccgactgggtcatgtccgcc
gagctggtggagacctcccggctgtgggcccgcgtcaacgccgcgatcgacccgctgtgg
gccgaggagctggccccgcacctggtcaagcgcagcgtctcggagccccactggtcccgc
gcgcagggatccgtgatggcctacgagaaggtcaccctctacggcgtgcccgtcgtggcc
cagcgccggatcaacttctggcgggtggaccccgccctggcgcgggagctgttcctccgc
cacgccctcgtggagggcgactggcagacccggcaccggttctgggcgcgcaaccgcaag
cgcctggccgaggtcgaggagctcgagaaccggctgcgccgcaaggacctgcggatcgac
gacgaggccctgttcgcgttctacgacgcccggatccccgagtccgtggtctcggcacgg
cacttcgacgcgtggtggaagaaggcccgccagcaggacgagcacctcctggacctggac
cccgaggacctgatcgccgaggaggccggcggctacgacgagtcgctctacccgcgccag
tgggtccggcgcacccgggacggggagctggtgctggacctcgcctacgagttcgccccg
ggctccgaccaggcggacggcgtgaccgtgcgcgtgcccgtgctgttcctcaaccagctg
gagccggagcagttccggtggcagatccccgggttccgcaccgagctcgtcaccgcgctc
atcaagtccctgccgaaggccgtgcgccgcaacttcgtgcccgcccccgacgtcgcccgc
caggcggtggcgatgctcgacgccgacttcgaccccgccgtcgacgccctcgagccgtcc
ctggagctggtcctgcgccggctcaagggccacgtggtcccgccgggctcctggaactgg
gaggccgtcccggcccacctgcggatgcgcttcgaggtgcgggaccgccgcaaccgggtg
ctgggcgagggcgaggacctcgaggcgctccgggcggagctgcacgacgagatccgtgcc
gccctggccgagtccctcggcgcggtgcccggcgcggcccccggcgccccggccggcggc
cccgcccggaagggcccgcgctcccccgcgccccggcccccggacgcggcgccggccccg
ccggcgctcgagcgctcggggctgacggcgtggcccgaggaggacctgccgcgcagcgtg
gagacgacggtggcgggccagcggatcaccgggtggccggcgctcgtgcccgagcgtgcc
cgggccgcggggagccggcacgccggccgggaggccacggtggccgtgcgcatcctgtcc
tccgccgccgagcagcgggccgcccagcgccgcggggtgatcacgctgctgcagctgcgc
atcccctctcccgagcggtacgtgctggagcacctcaacaaccgggagaagctggtcttc
acgcagaacccgcacgggtcggtgaccgagctcatcgcggactgcacggtcgcggccatc
gacaagctcacgccgcccgagccccccttcacccgggcggagttcgacgcgctgcacgag
cacgtgcgggccgagctcatcgacaccgtcttccaggtcaccgcgctcgtggagcaggtg
ctctccggggccgcccggatccgcaagcagctcaagcggtcgtcctcgctcgccgcggtg
aactcgctcaacgacgtcaaggcccagctcgagcacctcgtgcacccgggcttcgtcgcc
gccaccggctacgaccagctccagcacctgccccgctacgtgcgggcgatggaggtgcgg
ctcgagaagctcgccggccacctgcagcgggacacggtcgggatgctcgccgtgcagaag
ctcgaggacgactacgacgccgcgctggacgccctgccgccgcacgccccggtcccggac
gagctgcgccgggtggcctggatgatcgaggagctgcgggtctcgctgttcgcccaggag
ctgggcaccgcccacaccgtctcggagaagcggatccgcaaggccctcaaggacgccctc
ggggccgcccgggcctga
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