Kosakonia sacchari: C813_07765
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Entry
C813_07765 CDS
T03601
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ksa
Kosakonia sacchari
Pathway
ksa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ksa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C813_07765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ksa03019
]
C813_07765
Enzymes [BR:
ksa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C813_07765
Messenger RNA biogenesis [BR:
ksa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C813_07765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
AAA_30
P-loop_SecA
PCF11_RFEG_rpt
Utp25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AHJ74645
LinkDB
All DBs
Position
complement(3325129..3326604)
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AA seq
491 aa
AA seq
DB search
MSFDALGLNPEILRAVAEQGYLQPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL
QRLIQNEPHAKGRRPIRALILTPTRELAAQVGENVQAYSKYLNIRSLVVFGGVSINPQMM
KLRGGVDILVATPGRLLDLEHQNALKLDSVEILVLDEADRMLDMGFIHDIRRVLAKLPPK
RQNLLFSATFSDEIKQLAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMI
GEGNWQQVLVFTRTKHGANHLAEQLNKDGITSAAIHGNKSQGARTRALADFKSGDIRVLV
ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI
ERLLKKEIPRIALDGYEPDPSIKAEPIQNGRGQGGGRQGSGRGQGGSGRGQSAPRRSEGE
GQKPRSPRRAEGGTAKQEGGRRAEGGAKPTGGRRLDGGAAKPTSGRRLDGGAAPAGNPSR
RRRPRKPSAAE
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgatgcccttggcctgaacccggaaatcctgcgcgctgttgccgagcagggt
tatcttcagccgacccctattcagcagcaggctatcccggcggtgctgcaaggccgcgat
ctgatggcaagcgcccagaccggcaccggtaaaacggccggttttacgctgccgctgttg
caacgcctgattcaaaacgagccgcacgccaaaggccgtcgcccgatccgtgcgctgatc
ttaacgccaacccgtgagctggcggcgcaggtgggtgaaaacgttcaggcgtacagcaaa
tacctgaatatccgctcactggtggtgttcggtggcgtcagtatcaatccgcagatgatg
aagctgcgcggcggcgtggatatcctggtggcgacaccgggacgtctgctggatctggaa
caccagaacgcgctgaaactcgatagcgtggaaatcctggtgctggacgaagccgaccgc
atgctggatatgggctttatccacgatattcgccgcgtgctggcaaaactgccgccgaag
cgtcagaacctgctgttctccgcgaccttttccgatgagatcaaacagctggcagaaaag
ctgctgcgtaatccgctggagatcgaagtggcgcgccgcaataccgcctctgagcaggtc
acccagcatgtgcattttgtcgataaaaaacgcaaacgggaactgctgtcgcagatgatt
ggcgagggcaactggcagcaggtgctggttttcacccgtacgaaacacggggctaaccac
ctggcggagcaactgaataaagacggcatcaccagcgcggcgatccacggtaataagagc
cagggggcgcgtacgcgtgcgctggcagatttcaaatctggcgacattcgtgtgctggta
gcgaccgacattgctgcgcgtgggctcgacatcgaagagttgccgcatgtggtgaactat
gaactgccgaacgtgccggaagattacgtgcaccgtattggccgtaccggccgggcagcg
gcgactggcgaagcgctgtcactggtatgcgttgacgaacataaactgctgcgcgatatc
gaacgcctgctgaaaaaagagatcccgcgcattgcccttgacggttatgagccggatccg
tcgatcaaagccgagccgattcagaatggtcgtggccagggtggcggccgtcagggcagt
ggtcgcgggcagggcggcagtggtcgtggtcagtctgcgccgcgccgcagtgaaggcgaa
ggacaaaaaccgcgctccccgcgccgcgccgaaggtggcactgcgaagcaagagggtgga
cgccgtgctgaaggcggcgcgaagccgaccggtggtcgtcgtcttgatggcggcgctgcg
aaaccaaccagtggacgccgtcttgatggcggcgcggcgccggcgggcaacccgtctcgc
cgtcgtcgcccgcgcaaaccttccgccgccgagtaa
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