Kosakonia sacchari: C813_12910
Help
Entry
C813_12910 CDS
T03601
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ksa
Kosakonia sacchari
Pathway
ksa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ksa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C813_12910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ksa03019
]
C813_12910
03016 Transfer RNA biogenesis [BR:
ksa03016
]
C813_12910
Enzymes [BR:
ksa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
C813_12910
Messenger RNA biogenesis [BR:
ksa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C813_12910
Transfer RNA biogenesis [BR:
ksa03016
]
Prokaryotic type
tRNA degradation factors
C813_12910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
TFIIE_beta
Rho_RNA_bind
MetOD2
Motif
Other DBs
NCBI-ProteinID:
AHJ75533
LinkDB
All DBs
Position
complement(4363022..4365457)
Genome browser
AA seq
811 aa
AA seq
DB search
MSQDPFLERESEKYTNPIPSREFILDHLAKREKPASRDELAIELNIEGEEQQEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGMVIGHRDGYGFLRVEGRKDDLYLSSEQMKMCIH
GDQVLAQPLGADRKGRREARIVRVLVPKTGQIVGRYFTDAGVGFVVPDDSRMSFDILIPP
EEVMGARMGFVVVVELTQRPTRRTKAIGKIVEVLGDNMGTGMAVDMALRTHEIPYQWPPE
VEKQVAGLKEQVPEEAKVGRVDLRDLPLVTIDGEDARDFDDAVFCEKKRGGGWRLWVAIA
DVSYYVRHGTALDNEARNRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS
SKGRLTGFKFYEAVMSSHARLTYTKVWHMLQGDQELREQYAPLVKHIEELHNLYKVLDQA
RAERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKADEP
ALFRIHDKPTNDAITAFRSVLAELGLELPGGNKPEPRDYAALLESIADRPDHEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAKEQGLKGNSTETG
GWHYSMEEVLQLGQHCSMTERRADEATRDVSDWLKCDFMQDQVGNTFPGVIASVTGFGFF
VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVQVKVEAVNMDERKI
DFSLISSERSPRNVGKTEREKAKKGSAGKNGAAKKPPRRQMGKKVNFEPDSAFRGEGGKG
KAKKAKKPSAKTQKIAAATKAKRAAKKKTDQ
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatcctttcctcgaacgcgaatctgaaaaatataccaaccccattcccagc
cgcgaattcatcctcgatcacttagccaaacgcgaaaaacctgccagccgggacgaactg
gctatcgaactcaatatcgaaggtgaagagcaacaagaagcgctgcgccgccgtctgcgc
gctatggagcgcgacgggcaattagtctttacccgccgtcagtgctacgccttaccggaa
cgtctcgatctgctcaaaggcatggtgattggtcaccgcgacggctatggttttctgcgc
gttgaaggccgcaaagacgatctttatctctccagcgagcagatgaaaatgtgtattcac
ggcgatcaggtgctggcgcaaccgctgggtgccgatcgtaaaggccgccgcgaagcgcgc
atcgtacgcgtgctggtgccgaaaaccgggcagatcgttggccgctactttactgatgca
ggcgtcggttttgtcgtgccggatgatagccgcatgagttttgacatccttatcccgcct
gaagaggttatgggagcgcgcatgggctttgtggtggtcgttgagttgacacagcgtcca
acccgccgcacaaaagcgattggtaaaatcgtcgaggtgctcggcgacaatatgggtacc
ggcatggcggtcgacatggcgctgcgtactcatgaaattccttaccagtggccgccagaa
gtggaaaaacaggtcgccgggctgaaagagcaagtgccggaagaagccaaagttggacgc
gtcgatctgcgcgacctgccgctggtgaccattgatggcgaagacgcgcgcgacttcgac
gatgccgttttctgtgagaagaaacgcggcggcggctggcgcttatgggtagctatcgct
gatgtgagctactacgtgcgtcatggcaccgcgcttgataacgaagcccgtaaccgtggc
acgtcagtttacttcccatcgcaagtggtaccgatgctaccggaggtgctctcaaacggc
ctgtgctcgctgaacccgcaagtggatcgcctgtgcatggtctgtgaaatgaccgtctcc
tcaaaagggcgcttaaccggttttaaattctacgaagcggtgatgagctcccacgcacgt
ctgacctacaccaaagtgtggcatatgctgcaaggcgatcaggaactgcgtgagcagtac
gcgccgctggtgaaacacatcgaagagctgcataacctgtataaagtgctcgatcaggcg
cgcgctgagcgcggtggcatctcgtttgagagcgaggaagcgaagtttatcttcaacgcc
gagcgccgcattgagcgtattgagcagactcagcgtaacgatgcgcacaagctgattgaa
gagtgcatgatcctcgccaacatctccgccgcgcgttttgtggagaaagccgacgagccg
gcgctgttccgtattcacgataaaccgaccaacgatgcgatcaccgcgttccgttccgtg
cttgccgagctgggactggagttgccgggcggcaataaaccggagccgcgcgattacgcc
gcgctgctggaatcgattgccgatcgcccggatcacgaaatgctgcaaaccatgctgctg
cgctcgatgaaacaggcgatctacgatccggaaaaccgcggccacttcggcctggcgctg
caatcttatgcgcacttcacttcgccgattcgccgctaccctgacttatcactgcaccgc
gccattaaatatttactggcgaaagagcaggggctgaagggcaacagcaccgaaactggc
ggctggcactacagcatggaagaggtgttgcaactgggacagcactgttcgatgaccgaa
cgccgcgctgatgaagcgacccgtgatgtctcggactggctgaaatgcgactttatgcag
gatcaggtcggcaataccttcccgggtgttatcgccagcgtcaccggctttggtttcttc
gtgcggctcgacgatctgtttatcgatggtctggtgcatgtctcttcgttggataacgac
tattatcgtttcgatcaggtcggtcagcgtctgattggcgaatccggcgggcaaacgtat
cgcctcggtgatcgggtgcaggtaaaagtcgaagcggttaacatggatgagcgcaagatt
gacttctcgctgatctccagtgagcgcagcccgcgtaacgtgggtaaaaccgagcgtgaa
aaagcgaagaaaggttcggctggcaaaaacggcgctgcgaaaaagccgccgcgtcgccag
atgggtaaaaaagtgaatttcgagccagacagcgccttccgtggtgaaggtggaaaaggc
aaagcgaaaaaagccaaaaaaccgtcggctaaaacgcagaaaatcgccgccgcgactaaa
gcgaaacgcgcagcgaaaaagaaaaccgaccagtaa
DBGET
integrated database retrieval system
