Kosakonia sacchari: C813_14165
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Entry
C813_14165 CDS
T03601
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ksa
Kosakonia sacchari
Pathway
ksa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ksa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C813_14165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ksa03021
]
C813_14165
03400 DNA repair and recombination proteins [BR:
ksa03400
]
C813_14165
Enzymes [BR:
ksa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C813_14165
Transcription machinery [BR:
ksa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C813_14165
DNA repair and recombination proteins [BR:
ksa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C813_14165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AHJ75743
LinkDB
All DBs
Position
complement(4626260..4630483)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERNQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEYEKDANGEFVAKTSLKDTTVGRAILWMIVPKGLPFSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGVEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTLEGITMTPVIEGGDVKEPLRDRVL
GRVTAEDILKPGTADILVPRNTLLHEQWCDLLEANSVDSVKVRSVVSCDTDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIRL
SNAKTVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGEQVAGGETVANW
DPHTMPVITEVAGFIRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKI
VDANGNDVLIPGTDMPAQYFLPGKAIVQLEDGIQIGAGDALARIPQESSGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPVDGSEPYEEMIPKWRQLNVFE
GERVERGDVVSDGPEAPHDILRLRGVHAVTRYITNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIVNAGSSDFLEGEQVEYSRVKIANRDLEAAGKIGATYARDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGELPA
APQVTAEDASASLAELLNAGLGGSDNE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaaaaccgaagagtttgatgcgatc
aaaattgctctggcctcgccagacatgatccgttcatggtcttttggtgaagttaagaag
ccggaaaccatcaactaccgtacgttcaaacctgagcgtgacggccttttctgtgcgcgt
attttcgggccagtaaaagattacgagtgcctgtgcggtaagtacaagcgcctgaaacac
cgtggtgtgatctgtgagaagtgcggcgttgaagtgacccagacaaaagtgcgtcgtgag
cgcatgggccacatcgagctggcgtctccgaccgcccacatttggtttctgaaatctctg
ccgtcccgtatcggcctgctgctggatatgccgctgcgcgatatcgaacgtgttctgtac
ttcgaatcctatgtggttatcgaaggcggtatgaccaatctggaacgtaaccagatcctg
accgaagaacagtacctggacgcgctggaagagttcggtgacgaattcgacgcgaaaatg
ggcgccgaagctattcaggccctgctgaaaagcatggatctggagcaagagtgcgaacag
ctgcgcgaagagctgaacgaaaccaactccgaaaccaaacgtaagaagctgaccaagcgt
atcaagctgctggaagcgttcgtacagtctggtaacaaaccggagtggatgatcctgacc
gttctgccagtgctgccgccggacctgcgtccgctggttccgctggacggtggtcgtttc
gcaacgtcggatctgaacgatctgtaccgtcgcgtgatcaaccgtaacaaccgtctgaaa
cgcctgctggatctggcggcaccggacatcatcgtacgcaacgaaaaacgtatgctgcag
gaagcggttgacgccctgctggataacggccgtcgcggtcgtgcgatcaccggttccaac
aaacgtccgctgaaatctttggccgatatgatcaaaggtaaacagggtcgtttccgtcag
aacctgctcggtaagcgtgttgactactccggtcgttctgtgatcaccgtaggcccatac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcactggagctgttcaaaccgttt
atctacggcaagctggaactgcgtggcctcgccaccaccatcaaagccgcgaagaaaatg
gttgagcgcgaagaagctgtcgtttgggatatcctggacgaagtgatccgcgaacacccg
gtactgctgaaccgtgcaccaacactgcaccgtctgggtatccaggcgtttgaaccggta
ctgatcgaaggtaaagctatccagctgcacccgctggtttgtgcggcatataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagctggaagcg
cgtgcgctgatgatgtccaccaacaacattctgtctccggcgaacggcgaacctatcatc
gttccgtctcaggacgttgtattgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgactggcccgaaagaagctgagcgtatttaccgcgctggc
ctggcctctctgcatgcacgcgttaaagtgcgtatcactgaatatgaaaaagacgctaac
ggcgaattcgtagcgaaaaccagcctgaaagacacgaccgttggccgtgcgattctgtgg
atgatcgttccgaaaggtctgcctttctccatcgtcaaccaggcgctgggcaagaaagct
atttccaaaatgctgaacacgtgttaccgcattctgggcctgaaaccaaccgttatcttc
gcggaccagacgatgtacaccggctttgcttatgcagcgcgttcaggtgcatccgttggt
attgatgacatggtcatcccggagaagaaacacgaaatcatcagcgaagcggaagctgaa
gttgctgagattcaggagcagttccagtctggcctggtaaccgctggcgaacgttacaac
aaagttatcgatatttgggccgcggcgaacgatcgcgtatccaaagcgatgatggataac
ctgcaaaccgaaaccgttattaaccgtgacggcgttgaagagcagcaggtttcctttaac
agcatctacatgatggccgactccggtgcgcgtggttctgcagcccagattcgtcagctt
gctggtatgcgtggtctgatggcgaagccggatggctccatcatcgaaacgccgatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacgcacggtgcgcgt
aaaggtctggcggataccgcactgaaaaccgcgaactccggttacctgacccgtcgtctg
gttgacgtggcgcaggatctggtcgtaaccgaagacgattgtggcacgctggaaggcatc
accatgacgccggttatcgaaggtggtgatgttaaagagccgctgcgcgatcgcgttctg
ggtcgtgtaaccgcagaagacattctgaagccgggtaccgcagatattctggttccgcgc
aacacgctgctgcacgaacagtggtgtgacctgctggaagcgaactctgttgactcagtg
aaagtgcgttctgttgtatcgtgtgacaccgactttggtgtgtgcgcccactgctatggc
cgtgacctggcgcgtggccacatcatcaacaaaggtgaagccatcggcgttatcgcggca
cagtccatcggtgaaccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggctgctgaatccagcatccaggtgaaaaacaaaggtagcatccgcctg
agcaacgcgaagacggttgtgaactccagcggcaaactggttatcacctcgcgtaacact
gagctgaaactgatcgacgaattcggtcgtaccaaagaaagctataaagtaccttacggt
gcggtcatggcgaaaggtgatggcgagcaggttgctggcggtgaaaccgttgcaaactgg
gatccgcataccatgccggttatcactgaagtggctggtttcatccgcttcactgatatg
atcgacggccagacgattacgcgtcagaccgacgaactgaccggtctctcttcgctggtg
gttctggactccgcagagcgtaccgcgggtggtaaagacctgcgtccggcgctgaaaatc
gttgacgctaacggcaacgacgttctgatcccgggcaccgacatgcctgcgcagtacttc
ctgccgggtaaagcgatcgtccagttggaagatggcatccagatcggtgcgggtgatgcg
ctggcgcgtattccgcaggaatccagcggtaccaaggacatcaccggtggtctgccgcgc
gttgcggatctgttcgaagcacgtcgtccgaaagagccggcaatcctggctgaaatcagc
ggcatcatttccttcggtaaagaaaccaaagggaaacgccgtctggtgatcacgccggtt
gacggtagcgagccgtacgaagagatgattccgaaatggcgtcagctcaacgtgtttgaa
ggtgaacgtgtagaacgtggtgacgtggtttccgacggtccggaagcaccgcacgacatt
ctgcgtcttcgtggcgtacacgcggtaacgcgttatatcaccaacgaagtacaggacgtt
taccgtctgcagggcgttaagatcaacgataagcacatcgaagttatcgttcgtcagatg
ctgcgtaaagccaccatcgttaacgcaggaagctccgacttcctggaaggtgagcaggtt
gaatactctcgcgtcaagatcgctaaccgcgatctggaagcagcaggcaaaatcggtgca
acctatgcacgcgatctgctgggtatcaccaaagcgtctctggcaaccgagtccttcatc
tccgcggcatcgttccaggagactactcgtgtgcttaccgaagcagccgttgcgggcaaa
cgcgacgaactgcgcggtctgaaagagaacgttatcgtgggtcgtttgatcccggctggt
accggttatgcgtaccaccaggatcgtatgcgccgtcgcgccgctggcgaactgccggca
gcaccgcaggtgactgcggaagatgcgtccgcgagcctggcagaactgctgaacgcaggt
ctgggtggttccgacaacgagtaa
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integrated database retrieval system
