Kosakonia sacchari: C813_16080
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Entry
C813_16080 CDS
T03601
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ksa
Kosakonia sacchari
Pathway
ksa03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ksa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
C813_16080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ksa03400
]
C813_16080
Enzymes [BR:
ksa01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
C813_16080
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
C813_16080
DNA repair and recombination proteins [BR:
ksa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
C813_16080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Auto_anti-p27
zf-dskA_traR
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
AHJ76056
LinkDB
All DBs
Position
105657..106466
Genome browser
AA seq
269 aa
AA seq
DB search
MPELPEVETSRRGIEPHLVGETILHAVVRNGRLRWPVSEEIHSLSDKPVLSVQRRAKYLL
LELPDGWIIIHLGMSGSLRILPHELPAEKHDHVDLVMSNGKVLRYTDPRRFGAWLWTKEL
EGHNVLAHLGPEPLSDVFNAEYFQQKCAKKKTAIKPWLMDNKLVVGVGNIYASESLFAAG
IHPDRLASSLSAQECEILVRVIKAVLLRSIEQGGTTLKDFLQSDGKPGYFAQELQVYGRE
GEPCRVCGTPIVAAKHAQRSTFYCRRCQK
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattacccgaagtcgaaaccagccgcagaggtattgaaccgcaccttgttggc
gaaaccattcttcacgcggtggtgcgcaacgggcgattgcgctggccggtttccgaagag
atccacagcctgagcgacaaaccggtactgagcgttcagcgccgcgccaaatatttgctg
ctcgaattgcccgacggctggatcattattcaccttggcatgtccggtagcctgcgtatt
cttccccatgagctgcctgctgaaaaacacgaccacgtcgatttagtgatgagcaacggc
aaagtgctgcgctacaccgatccacgtcgttttggcgcgtggctgtggacgaaagagctg
gaaggccacaatgtactggcgcatctcggcccggaaccgctcagcgacgttttcaacgct
gaatatttccagcagaaatgcgcgaagaagaaaaccgccattaaaccctggctcatggat
aacaagctggtggtcggcgtggggaatatctacgccagcgaatcgctgtttgctgccggg
atccatcccgatcggctggcttcatcactctcggcgcaggagtgcgaaattctggtgcgg
gtgatcaaagcggtgctgcttcgctctatcgaacagggcggaaccacgctaaaagacttt
ttgcaaagcgacggtaaaccgggttatttcgctcaggagttgcaggtatatggtcgggaa
ggggaaccttgtcgcgtctgcggcacgccgattgttgccgcaaagcatgcacagcgttca
acgttttactgccgacgctgccagaaataa
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