Kosakonia sacchari: C813_24420
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Entry
C813_24420 CDS
T03601
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ksa
Kosakonia sacchari
Brite
KEGG Orthology (KO) [BR:
ksa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ksa03019
]
C813_24420
Enzymes [BR:
ksa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
C813_24420
Messenger RNA biogenesis [BR:
ksa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
C813_24420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
T2SSE
NACHT
ResIII
PhoH
AAA_11
NTPase_1
ABC_tran
AAA_16
TsaE
AAA_23
Motif
Other DBs
NCBI-ProteinID:
AIA25047
LinkDB
All DBs
Position
2316254..2320156
Genome browser
AA seq
1300 aa
AA seq
DB search
MTEQQKLTITDLSAQLNTLMLRDQQRFARRLHGSKKVKNPESQQALLQTLAQEISEAAGK
VAQREAARPTIDYPDNLPVSQKKQAILEAIRDNQVVIVAGETGSGKTTQLPKICMELGRG
IKGLIGHTQPRRLAARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPRRPDLKIIITSATIDPQRFSRH
FNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGRENAGDILIFMSGE
REIRDTADALSKRDLRHTEILPLYARLSNSEQNRVFQPHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGICIRLYSEDDFLSR
PEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQ
QTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPLDKKQA
SDEKHQRFHDKESDFLAFVNLWNYLGEQQKALSSNQFRRQCRVDYLNYLRVREWQDIYTQ
LRQVVKELGIPVNSEPAEYREIHIALLTGLLSHIGMKDADKQEFTGARNARFAIFPGSGL
FKKPPKWTMVAELVETSRLWGRIAARIDPEWVEPVAQHLIKRSYSEPHWERAQGAVMATE
KVTVYGLPIVAARKVNYSQIDPTLCRELFIRHALVEGDWQTRHAFFRDNLKLRAEVEELE
HKSRRRDILVDDETLFEFYDQRISHEVISARHFDSWWKKASREAPDLLNFEKSMLIKEGA
EGVSKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQVEESGFEWQIPGLRR
ELVIALIKSLPKPTRRNFVPAPNYAEAFLGRVTPLELPLLDALERELRRMTGVTVDRDDW
HWDQVPDHLKISFRVVDDKNKKLLEGRSLSELKERLKGKVQETLSAVADDGIEQRGLHIW
SFGQLPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPLEQQQAMWRGIRRLLLLNIPS
PIKYLHEKLPNKAKLGLYFNPYGKMLELIDDCISCGVDKLIDEAGGPVWSEEGFAALHEK
VRAELNETVVEIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDIKAQMNGLVYRGFVTG
NGFRRLGDTLRYLQAIEKRLEKLAVDPHRDRAQMLKVEQTQQAWQQWLNKLPPARREDED
VKAIRWMIEELRVSYFAQQLGTPYPISDKRILQAMEQISA
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacaacagaaattgacgattaccgatctcagcgcgcagctcaacaccctgatg
ctacgcgaccagcagcgcttcgcccgccgcctgcatggcagcaagaaagttaaaaatcct
gaatctcagcaagcactgctgcagacgttggcgcaagagataagcgaagccgccggaaaa
gtggcgcagcgcgaagccgcgcgcccgaccattgattacccggataacctgccggtcagc
cagaaaaagcaggctatcctggaagctatccgcgataaccaggtggtgattgtggccggt
gaaaccggctccggtaaaaccacgcaattaccgaaaatttgcatggagctggggcgcggc
attaaagggctgattggccatacccagccgcgtcgtctggcggcgcgcaccgtcgccaac
cgtattgccgaagagctgaaaacggagccgggcggctgcatcggttataaggtgcgtttc
agcgatcatgtcagcgataacaccatggtcaagctaatgaccgacggtattctgctggcg
gaaattcagcaggatcgcttgctgatgcaatacgacaccatcattatcgatgaggcgcac
gaacgcagcctgaacatcgattttctgctgggttatctgcgtgaattactgccgcgtcgc
ccggatctgaaaatcatcatcacctccgccaccatcgatccgcaacgtttctcgcgccat
ttcaataacgcgccgattatcgaagtgtccgggcgcacttacccggtggaagtgcgctac
cggccgattgtcgaagaagcggatgacacggaacgcgaccagttacaggcgatttttgat
gcggtggacgagcttgggcgcgaaaatgcaggcgatattctgatcttcatgagcggcgaa
cgggaaatccgcgacaccgccgatgccctgagcaagcgcgatctgcgccacacggagatc
ctgccgctatatgcgcgtttatcaaacagtgaacagaaccgcgtattccagccacacagc
gggcggcgcatcgtgctggcgaccaacgtggcggaaacgtcgctgaccgtaccgggcatc
aaatatgtcattgatccgggtaccgcgcgcatcagccgctacagctatcgcaccaaagtg
caacgcctgccgattgaaccggtttctcaggcttccgcgaaccagcgtaaagggcgctgc
gggcgcgtgtcggaagggatctgtattcgtctctattcagaagacgatttcctgtcacgc
ccggaatttaccgatccggaaattctgcgcaccaacctggcgtcggtcattttgcaaatg
acggcgttggggcttggtgatattgccgccttcccgtttgttgaagcgccggataaacgc
aatattcaggacggtgtgcgcctgctggaagagttgggcgcgatcaccaccgacgaacag
cagacggcgtataaactgacgccgctcggccgccagctatcgcaactgccggtcgatcca
cgcttagcgcgtatggtgctggaagcgcaaaaacatggctgtgtgcgtgaagcaatgatc
attacttcggcgctgtcgattcaggatccgcgcgaacgaccgctggataaaaagcaggct
tcagacgagaagcatcagcgcttccatgataaagagtccgacttcctcgcgtttgtgaac
ctgtggaactacctgggcgagcagcaaaaagcgctctcgtcaaaccagttccgccgtcag
tgccgggtcgattacctgaactatctgcgcgtgcgcgaatggcaggatatctacacccaa
ctgcgccaggtggtgaaagagttagggatcccggtcaacagcgagcctgcggaataccgc
gaaattcacatcgcgctgttaaccggtttgctgtcgcacattggtatgaaagatgccgac
aaacaggaatttaccggcgcacgtaacgcccgttttgccatcttccccggctcggggtta
ttcaaaaaaccgccgaaatggaccatggtggcagaactggtggaaaccagccgtttgtgg
gggcgcatcgccgcacgcatagatccggagtgggttgaaccggtagcgcagcacctgatt
aagcgttcatacagtgaaccgcactgggagcgagcgcagggtgcggtaatggcaacggaa
aaagtgactgtttatggcctgccgatcgtggcggcgcgcaaagtgaactacagccagatc
gacccgacgctttgtcgtgaactctttattcgccacgcgctggtcgagggtgactggcaa
acccggcatgctttctttcgcgacaacctgaaactgcgcgcggaagtggaagaactggaa
cataaatcccgccgccgcgacattctggtggacgatgaaacactgtttgagttttatgac
cagcgcatcagccacgaggtgatttccgcccgccatttcgatagctggtggaaaaaggcc
agccgtgaagcccctgatctgctcaacttcgaaaagagcatgctgatcaaagagggcgct
gaaggggtgagtaaactcgattaccccaacttctggcatcagggcaacctgaagctgcgc
ctgagttaccagtttgaaccgggcgcggatgccgatggcgtcacggtacatattccgctg
ccgttattaaaccaggttgaagagagcgggtttgagtggcaaattcccggcctgcgtcgc
gaactggtgattgcgctgattaaatcgctgccgaaaccaacgcggcgcaactttgttcct
gcgccaaactacgccgaagcgtttcttgggcgcgtcacgccgctggaactgccgttgctg
gatgcgctggagcgtgaactgcgccggatgaccggcgttaccgtcgaccgcgacgactgg
cactgggatcaggtgcccgatcacctgaaaatcagcttccgcgtggtggatgacaaaaat
aaaaagctgctcgaaggtcgctcgttgagcgaactgaaagagcgcctgaaaggcaaagtg
caggaaactctttctgcggttgctgatgacggtatcgagcagcgcggtttgcatatctgg
agctttggtcagcttccggaaagctacgagcaaaaacgcggtaattataaggttaaagcc
tggcctgcgctggtcgatgaacgtgacagtgtcgcgatcaagctgttcgataacccgctg
gagcagcaacaggcgatgtggcgtggtatccgccgcctgctgttgctgaatattccgtcg
cccattaaatatctgcacgaaaaattgccgaacaaagccaaactgggtctctatttcaac
ccgtacggcaaaatgctggagttgatcgatgactgcatctcctgcggcgtagataaactt
atcgacgaggcaggcggcccggtgtggagcgaagagggcttcgctgcgctgcatgagaaa
gtgcgtgcggagctgaacgaaacggtagtggagatcgccaaacaggtcgaacagatcctg
acggcggtgttcaatatcaacaagcgactgaaagggcgcgttgatatgaccatggcgctt
gggctgtcggacatcaaagcgcagatgaacggtctggtgtatcgcgggtttgttaccggc
aacggtttccgccgtctgggtgacacgttgcgttacctgcaagccatcgagaagcggctg
gagaaactggctgtcgatccgcaccgcgaccgcgcgcagatgctgaaagtggagcagacg
cagcaagcctggcagcagtggctgaataaactgccgccggcacgccgggaagatgaggat
gtaaaagcgatccgctggatgatcgaagagctgcgcgtcagctactttgcccagcagctg
gggacaccatatcccatctccgataagcgcatcctgcaggcaatggagcagattagcgcc
tga
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